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Cluster: HRGMv2_3195_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3195_18 HRGMv2_3195_18_21 20977 22743 + GH13_9
NULL(UNKNOWN) HRGMv2_3195_18 HRGMv2_3195_18_22 22888 23031 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3195_18 HRGMv2_3195_18_23 23309 24643 + 3.D.6.1.2
TC HRGMv2_3195_18 HRGMv2_3195_18_24 24646 25629 + 3.D.6.1.1
pfam HRGMv2_3195_18 HRGMv2_3195_18_25 25629 26213 + FMN_bind
TC HRGMv2_3195_18 HRGMv2_3195_18_26 26216 26902 + 3.D.6.1.2
TC HRGMv2_3195_18 HRGMv2_3195_18_27 26899 27537 + 3.D.6.1.2
TC HRGMv2_3195_18 HRGMv2_3195_18_28 27558 28394 + 3.D.6.1.3
pfam HRGMv2_3195_18 HRGMv2_3195_18_29 28492 29424 - NTP_transferase
pfam HRGMv2_3195_18 HRGMv2_3195_18_30 29661 30842 + Patatin
TC HRGMv2_3195_18 HRGMv2_3195_18_31 30906 32501 + 8.A.7.1.5
Gene ID: HRGMv2_3195_18_21
Type: CAZyme
Location: 20977 - 22743 (+)
Gene ID: HRGMv2_3195_18_22
Type:
Location: 22888 - 23031 (-)
Gene ID: HRGMv2_3195_18_23
Type: TC
Location: 23309 - 24643 (+)
Gene ID: HRGMv2_3195_18_24
Type: TC
Location: 24646 - 25629 (+)
Gene ID: HRGMv2_3195_18_25
Type: pfam
Location: 25629 - 26213 (+)
Gene ID: HRGMv2_3195_18_26
Type: TC
Location: 26216 - 26902 (+)
Gene ID: HRGMv2_3195_18_27
Type: TC
Location: 26899 - 27537 (+)
Gene ID: HRGMv2_3195_18_28
Type: TC
Location: 27558 - 28394 (+)
Gene ID: HRGMv2_3195_18_29
Type: pfam
Location: 28492 - 29424 (-)
Gene ID: HRGMv2_3195_18_30
Type: pfam
Location: 29661 - 30842 (+)
Gene ID: HRGMv2_3195_18_31
Type: TC
Location: 30906 - 32501 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
Gemmiger
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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