Cluster: HRGMv2_3195_CGC25
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3195
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3195_15 | HRGMv2_3195_15_47 | 49402 | 50454 | + | 9.B.18.2.1 |
| pfam | HRGMv2_3195_15 | HRGMv2_3195_15_48 | 50441 | 51625 | + | Epimerase | Polysacc_synt_C |
| pfam | HRGMv2_3195_15 | HRGMv2_3195_15_49 | 51657 | 52796 | + | Epimerase_2 |
| CAZyme | HRGMv2_3195_15 | HRGMv2_3195_15_50 | 52819 | 54045 | + | GT4 |
| CAZyme | HRGMv2_3195_15 | HRGMv2_3195_15_51 | 54104 | 54826 | + | GT2 |
| pfam | HRGMv2_3195_15 | HRGMv2_3195_15_52 | 54870 | 55259 | + | DUF2304 |
| TC | HRGMv2_3195_15 | HRGMv2_3195_15_53 | 55290 | 56750 | + | 2.A.50.2.1 |
Gene ID: HRGMv2_3195_15_47
Type: TC
Location: 49402 - 50454 (+)
Type: TC
Location: 49402 - 50454 (+)
Gene ID: HRGMv2_3195_15_48
Type: pfam
Location: 50441 - 51625 (+)
Type: pfam
Location: 50441 - 51625 (+)
Gene ID: HRGMv2_3195_15_49
Type: pfam
Location: 51657 - 52796 (+)
Type: pfam
Location: 51657 - 52796 (+)
Gene ID: HRGMv2_3195_15_50
Type: CAZyme
Location: 52819 - 54045 (+)
Type: CAZyme
Location: 52819 - 54045 (+)
Gene ID: HRGMv2_3195_15_51
Type: CAZyme
Location: 54104 - 54826 (+)
Type: CAZyme
Location: 54104 - 54826 (+)
Gene ID: HRGMv2_3195_15_52
Type: pfam
Location: 54870 - 55259 (+)
Type: pfam
Location: 54870 - 55259 (+)
Gene ID: HRGMv2_3195_15_53
Type: TC
Location: 55290 - 56750 (+)
Type: TC
Location: 55290 - 56750 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.