Cluster: HRGMv2_3195_CGC24
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3195
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3195_14 | HRGMv2_3195_14_4 | 7409 | 7888 | - | 1.A.22.1.3 |
| TC | HRGMv2_3195_14 | HRGMv2_3195_14_5 | 7907 | 8731 | - | 3.A.1.132.3 |
| pfam | HRGMv2_3195_14 | HRGMv2_3195_14_6 | 8903 | 9724 | - | PNP_UDP_1 |
| pfam | HRGMv2_3195_14 | HRGMv2_3195_14_7 | 9851 | 11371 | + | MatE | Polysacc_synt |
| CAZyme | HRGMv2_3195_14 | HRGMv2_3195_14_8 | 11373 | 12941 | - | GH77 |
| TC | HRGMv2_3195_14 | HRGMv2_3195_14_9 | 13106 | 14869 | - | 3.A.1.106.2 |
Gene ID: HRGMv2_3195_14_4
Type: TC
Location: 7409 - 7888 (-)
Type: TC
Location: 7409 - 7888 (-)
Gene ID: HRGMv2_3195_14_5
Type: TC
Location: 7907 - 8731 (-)
Type: TC
Location: 7907 - 8731 (-)
Gene ID: HRGMv2_3195_14_6
Type: pfam
Location: 8903 - 9724 (-)
Type: pfam
Location: 8903 - 9724 (-)
Gene ID: HRGMv2_3195_14_7
Type: pfam
Location: 9851 - 11371 (+)
Type: pfam
Location: 9851 - 11371 (+)
Gene ID: HRGMv2_3195_14_8
Type: CAZyme
Location: 11373 - 12941 (-)
Type: CAZyme
Location: 11373 - 12941 (-)
Gene ID: HRGMv2_3195_14_9
Type: TC
Location: 13106 - 14869 (-)
Type: TC
Location: 13106 - 14869 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.