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Cluster: HRGMv2_3195_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3195_13 HRGMv2_3195_13_10 10969 11937 + 3.A.1.1.10
TC HRGMv2_3195_13 HRGMv2_3195_13_11 11957 12853 + 3.A.1.1.10
CAZyme HRGMv2_3195_13 HRGMv2_3195_13_12 12869 14038 + GH33
NULL(UNKNOWN) HRGMv2_3195_13 HRGMv2_3195_13_13 13921 14445 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3195_13 HRGMv2_3195_13_14 15266 16681 + GH43_35
TC HRGMv2_3195_13 HRGMv2_3195_13_15 16684 18039 + 2.A.2.3.3
TF HRGMv2_3195_13 HRGMv2_3195_13_16 18125 19045 + HTH_AraC
CAZyme HRGMv2_3195_13 HRGMv2_3195_13_17 19021 21141 + GH3
CAZyme HRGMv2_3195_13 HRGMv2_3195_13_18 21310 23907 - GH38
TC HRGMv2_3195_13 HRGMv2_3195_13_19 23938 25848 - 4.A.2.1.3
Gene ID: HRGMv2_3195_13_10
Type: TC
Location: 10969 - 11937 (+)
Gene ID: HRGMv2_3195_13_11
Type: TC
Location: 11957 - 12853 (+)
Gene ID: HRGMv2_3195_13_12
Type: CAZyme
Location: 12869 - 14038 (+)
Gene ID: HRGMv2_3195_13_13
Type:
Location: 13921 - 14445 (-)
Gene ID: HRGMv2_3195_13_14
Type: CAZyme
Location: 15266 - 16681 (+)
Gene ID: HRGMv2_3195_13_15
Type: TC
Location: 16684 - 18039 (+)
Gene ID: HRGMv2_3195_13_16
Type: TF
Location: 18125 - 19045 (+)
Gene ID: HRGMv2_3195_13_17
Type: CAZyme
Location: 19021 - 21141 (+)
Gene ID: HRGMv2_3195_13_18
Type: CAZyme
Location: 21310 - 23907 (-)
Gene ID: HRGMv2_3195_13_19
Type: TC
Location: 23938 - 25848 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
Gemmiger
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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