Cluster: HRGMv2_3195_CGC22
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3195
- CGC Family ID: CGCFAM_00342
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3195_12 | HRGMv2_3195_12_49 | 59437 | 60720 | + | 3.A.1.1.44 |
| TC | HRGMv2_3195_12 | HRGMv2_3195_12_50 | 60733 | 61617 | + | 3.A.1.1.25 |
| TC | HRGMv2_3195_12 | HRGMv2_3195_12_51 | 61621 | 62457 | + | 3.A.1.1.23 |
| CAZyme | HRGMv2_3195_12 | HRGMv2_3195_12_52 | 62626 | 64872 | + | GH36 |
| STP | HRGMv2_3195_12 | HRGMv2_3195_12_53 | 64898 | 65842 | + | PfkB |
| CAZyme | HRGMv2_3195_12 | HRGMv2_3195_12_54 | 65860 | 67722 | + | GH13_4 |
Gene ID: HRGMv2_3195_12_49
Type: TC
Location: 59437 - 60720 (+)
Type: TC
Location: 59437 - 60720 (+)
Gene ID: HRGMv2_3195_12_50
Type: TC
Location: 60733 - 61617 (+)
Type: TC
Location: 60733 - 61617 (+)
Gene ID: HRGMv2_3195_12_51
Type: TC
Location: 61621 - 62457 (+)
Type: TC
Location: 61621 - 62457 (+)
Gene ID: HRGMv2_3195_12_52
Type: CAZyme
Location: 62626 - 64872 (+)
Type: CAZyme
Location: 62626 - 64872 (+)
Gene ID: HRGMv2_3195_12_53
Type: STP
Location: 64898 - 65842 (+)
Type: STP
Location: 64898 - 65842 (+)
Gene ID: HRGMv2_3195_12_54
Type: CAZyme
Location: 65860 - 67722 (+)
Type: CAZyme
Location: 65860 - 67722 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.