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Cluster: HRGMv2_3195_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3195_12 HRGMv2_3195_12_38 42488 45094 - GH3
pfam HRGMv2_3195_12 HRGMv2_3195_12_39 45120 46400 - MFS_1
CAZyme HRGMv2_3195_12 HRGMv2_3195_12_40 46420 48249 - GH20
CAZyme HRGMv2_3195_12 HRGMv2_3195_12_41 48301 51402 - GH38
CAZyme HRGMv2_3195_12 HRGMv2_3195_12_42 51442 52431 - GH130_2
pfam HRGMv2_3195_12 HRGMv2_3195_12_43 52844 54352 - DUF3502
TC HRGMv2_3195_12 HRGMv2_3195_12_44 54423 55388 - 3.A.1.1.29
TC HRGMv2_3195_12 HRGMv2_3195_12_45 55406 56377 - 3.A.1.1.10
Gene ID: HRGMv2_3195_12_38
Type: CAZyme
Location: 42488 - 45094 (-)
Gene ID: HRGMv2_3195_12_39
Type: pfam
Location: 45120 - 46400 (-)
Gene ID: HRGMv2_3195_12_40
Type: CAZyme
Location: 46420 - 48249 (-)
Gene ID: HRGMv2_3195_12_41
Type: CAZyme
Location: 48301 - 51402 (-)
Gene ID: HRGMv2_3195_12_42
Type: CAZyme
Location: 51442 - 52431 (-)
Gene ID: HRGMv2_3195_12_43
Type: pfam
Location: 52844 - 54352 (-)
Gene ID: HRGMv2_3195_12_44
Type: TC
Location: 54423 - 55388 (-)
Gene ID: HRGMv2_3195_12_45
Type: TC
Location: 55406 - 56377 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
Gemmiger
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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