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Cluster: HRGMv2_3195_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3195_9 HRGMv2_3195_9_37 52419 55625 - GH3
CAZyme HRGMv2_3195_9 HRGMv2_3195_9_38 55773 57221 - GH43_35
pfam HRGMv2_3195_9 HRGMv2_3195_9_39 57449 58759 - HATPase_c_5
TF HRGMv2_3195_9 HRGMv2_3195_9_40 58759 59466 - LytTR
TC HRGMv2_3195_9 HRGMv2_3195_9_41 59648 60493 - 3.A.1.1.18
TC HRGMv2_3195_9 HRGMv2_3195_9_42 60495 61388 - 3.A.1.1.4
STP HRGMv2_3195_9 HRGMv2_3195_9_43 61464 62819 - SBP_bac_1
TF HRGMv2_3195_9 HRGMv2_3195_9_44 62944 64428 - HTH_AraC | HTH_AraC
TC HRGMv2_3195_9 HRGMv2_3195_9_45 64406 66262 - 8.A.59.2.1
Gene ID: HRGMv2_3195_9_37
Type: CAZyme
Location: 52419 - 55625 (-)
Gene ID: HRGMv2_3195_9_38
Type: CAZyme
Location: 55773 - 57221 (-)
Gene ID: HRGMv2_3195_9_39
Type: pfam
Location: 57449 - 58759 (-)
Gene ID: HRGMv2_3195_9_40
Type: TF
Location: 58759 - 59466 (-)
Gene ID: HRGMv2_3195_9_41
Type: TC
Location: 59648 - 60493 (-)
Gene ID: HRGMv2_3195_9_42
Type: TC
Location: 60495 - 61388 (-)
Gene ID: HRGMv2_3195_9_43
Type: STP
Location: 61464 - 62819 (-)
Gene ID: HRGMv2_3195_9_44
Type: TF
Location: 62944 - 64428 (-)
Gene ID: HRGMv2_3195_9_45
Type: TC
Location: 64406 - 66262 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
Gemmiger
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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