Cluster: HRGMv2_3195_CGC15
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3195
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3195_9 | HRGMv2_3195_9_1 | 1216 | 2568 | - | 2.A.66.1.32 |
| TC | HRGMv2_3195_9 | HRGMv2_3195_9_2 | 2929 | 3888 | + | 3.A.1.1.10 |
| TC | HRGMv2_3195_9 | HRGMv2_3195_9_3 | 3908 | 4801 | + | 3.A.1.1.29 |
| pfam | HRGMv2_3195_9 | HRGMv2_3195_9_4 | 4923 | 7643 | + | Trehalase | Glyco_hydro_63 | MGH1-like_GH |
| TF | HRGMv2_3195_9 | HRGMv2_3195_9_5 | 7808 | 10102 | + | HTH_AraC |
| TC | HRGMv2_3195_9 | HRGMv2_3195_9_6 | 10300 | 11940 | + | 3.A.1.1.10 |
| TC | HRGMv2_3195_9 | HRGMv2_3195_9_7 | 12203 | 13849 | + | 3.A.1.1.10 |
| pfam | HRGMv2_3195_9 | HRGMv2_3195_9_8 | 13924 | 14679 | + | DLH | Abhydrolase_2 | Abhydrolase_3 | Abhydrolase_6 | BD-FAE |
| CAZyme | HRGMv2_3195_9 | HRGMv2_3195_9_9 | 14694 | 16910 | + | GH2 |
| peptidase | HRGMv2_3195_9 | HRGMv2_3195_9_10 | 16907 | 18220 | + | S09.UPW |
| pfam | HRGMv2_3195_9 | HRGMv2_3195_9_11 | 18232 | 19113 | + | Amidohydro_2 |
| CAZyme | HRGMv2_3195_9 | HRGMv2_3195_9_12 | 19130 | 20875 | + | GH3 |
| pfam | HRGMv2_3195_9 | HRGMv2_3195_9_13 | 20892 | 21731 | + | Hydrolase | HAD_2 |
| NULL(UNKNOWN) | HRGMv2_3195_9 | HRGMv2_3195_9_14 | 22134 | 22778 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3195_9 | HRGMv2_3195_9_15 | 22598 | 25882 | - | 3.A.17.1.1 |
Gene ID: HRGMv2_3195_9_1
Type: TC
Location: 1216 - 2568 (-)
Type: TC
Location: 1216 - 2568 (-)
Gene ID: HRGMv2_3195_9_2
Type: TC
Location: 2929 - 3888 (+)
Type: TC
Location: 2929 - 3888 (+)
Gene ID: HRGMv2_3195_9_3
Type: TC
Location: 3908 - 4801 (+)
Type: TC
Location: 3908 - 4801 (+)
Gene ID: HRGMv2_3195_9_4
Type: pfam
Location: 4923 - 7643 (+)
Type: pfam
Location: 4923 - 7643 (+)
Gene ID: HRGMv2_3195_9_5
Type: TF
Location: 7808 - 10102 (+)
Type: TF
Location: 7808 - 10102 (+)
Gene ID: HRGMv2_3195_9_6
Type: TC
Location: 10300 - 11940 (+)
Type: TC
Location: 10300 - 11940 (+)
Gene ID: HRGMv2_3195_9_7
Type: TC
Location: 12203 - 13849 (+)
Type: TC
Location: 12203 - 13849 (+)
Gene ID: HRGMv2_3195_9_8
Type: pfam
Location: 13924 - 14679 (+)
Type: pfam
Location: 13924 - 14679 (+)
Gene ID: HRGMv2_3195_9_9
Type: CAZyme
Location: 14694 - 16910 (+)
Type: CAZyme
Location: 14694 - 16910 (+)
Gene ID: HRGMv2_3195_9_10
Type: peptidase
Location: 16907 - 18220 (+)
Type: peptidase
Location: 16907 - 18220 (+)
Gene ID: HRGMv2_3195_9_11
Type: pfam
Location: 18232 - 19113 (+)
Type: pfam
Location: 18232 - 19113 (+)
Gene ID: HRGMv2_3195_9_12
Type: CAZyme
Location: 19130 - 20875 (+)
Type: CAZyme
Location: 19130 - 20875 (+)
Gene ID: HRGMv2_3195_9_13
Type: pfam
Location: 20892 - 21731 (+)
Type: pfam
Location: 20892 - 21731 (+)
Gene ID: HRGMv2_3195_9_14
Type:
Location: 22134 - 22778 (+)
Type:
Location: 22134 - 22778 (+)
Gene ID: HRGMv2_3195_9_15
Type: TC
Location: 22598 - 25882 (-)
Type: TC
Location: 22598 - 25882 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.