Cluster: HRGMv2_3195_CGC14
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3195
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3195_8 | HRGMv2_3195_8_70 | 72114 | 73136 | + | GT2 |
| pfam | HRGMv2_3195_8 | HRGMv2_3195_8_71 | 73183 | 75024 | + | TPP_enzyme_M | TPP_enzyme_C | TPP_enzyme_N |
| pfam | HRGMv2_3195_8 | HRGMv2_3195_8_72 | 75038 | 75970 | + | Epimerase | NmrA | GDP_Man_Dehyd |
| CAZyme | HRGMv2_3195_8 | HRGMv2_3195_8_73 | 75963 | 76937 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_3195_8 | HRGMv2_3195_8_74 | 76937 | 78700 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3195_8 | HRGMv2_3195_8_75 | 78754 | 80748 | - | 4.A.2.1.4 |
| TC | HRGMv2_3195_8 | HRGMv2_3195_8_76 | 80791 | 81903 | - | 3.A.1.1.26 |
Gene ID: HRGMv2_3195_8_70
Type: CAZyme
Location: 72114 - 73136 (+)
Type: CAZyme
Location: 72114 - 73136 (+)
Gene ID: HRGMv2_3195_8_71
Type: pfam
Location: 73183 - 75024 (+)
Type: pfam
Location: 73183 - 75024 (+)
Gene ID: HRGMv2_3195_8_72
Type: pfam
Location: 75038 - 75970 (+)
Type: pfam
Location: 75038 - 75970 (+)
Gene ID: HRGMv2_3195_8_73
Type: CAZyme
Location: 75963 - 76937 (+)
Type: CAZyme
Location: 75963 - 76937 (+)
Gene ID: HRGMv2_3195_8_74
Type:
Location: 76937 - 78700 (+)
Type:
Location: 76937 - 78700 (+)
Gene ID: HRGMv2_3195_8_75
Type: TC
Location: 78754 - 80748 (-)
Type: TC
Location: 78754 - 80748 (-)
Gene ID: HRGMv2_3195_8_76
Type: TC
Location: 80791 - 81903 (-)
Type: TC
Location: 80791 - 81903 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.