Cluster: HRGMv2_3195_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3195
- CGC Family ID: CGCFAM_00233
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3195_7 | HRGMv2_3195_7_70 | 79306 | 80055 | + | GT26 |
| TC | HRGMv2_3195_7 | HRGMv2_3195_7_71 | 80077 | 81522 | + | 9.B.18.1.2 |
| TF | HRGMv2_3195_7 | HRGMv2_3195_7_72 | 81626 | 82336 | + | LytTR |
| pfam | HRGMv2_3195_7 | HRGMv2_3195_7_73 | 82336 | 83619 | + | HATPase_c_5 |
| CAZyme | HRGMv2_3195_7 | HRGMv2_3195_7_74 | 83891 | 86950 | + | GH3 |
| CAZyme | HRGMv2_3195_7 | HRGMv2_3195_7_75 | 87021 | 89453 | + | GH3 |
Gene ID: HRGMv2_3195_7_70
Type: CAZyme
Location: 79306 - 80055 (+)
Type: CAZyme
Location: 79306 - 80055 (+)
Gene ID: HRGMv2_3195_7_71
Type: TC
Location: 80077 - 81522 (+)
Type: TC
Location: 80077 - 81522 (+)
Gene ID: HRGMv2_3195_7_72
Type: TF
Location: 81626 - 82336 (+)
Type: TF
Location: 81626 - 82336 (+)
Gene ID: HRGMv2_3195_7_73
Type: pfam
Location: 82336 - 83619 (+)
Type: pfam
Location: 82336 - 83619 (+)
Gene ID: HRGMv2_3195_7_74
Type: CAZyme
Location: 83891 - 86950 (+)
Type: CAZyme
Location: 83891 - 86950 (+)
Gene ID: HRGMv2_3195_7_75
Type: CAZyme
Location: 87021 - 89453 (+)
Type: CAZyme
Location: 87021 - 89453 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.