Cluster: HRGMv2_3195_CGC1
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3195
- CGC Family ID: CGCFAM_00100
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3195_1 | HRGMv2_3195_1_4 | 1843 | 2589 | + | 3.A.2.1.5 |
| TC | HRGMv2_3195_1 | HRGMv2_3195_1_5 | 2638 | 2916 | + | 3.A.2.1.2 |
| pfam | HRGMv2_3195_1 | HRGMv2_3195_1_6 | 2960 | 3460 | + | ATP-synt_B |
| pfam | HRGMv2_3195_1 | HRGMv2_3195_1_7 | 3457 | 3996 | + | OSCP |
| TC | HRGMv2_3195_1 | HRGMv2_3195_1_8 | 4009 | 5523 | + | 3.A.2.1.5 |
| TC | HRGMv2_3195_1 | HRGMv2_3195_1_9 | 5545 | 6390 | + | 3.A.2.1.5 |
| TC | HRGMv2_3195_1 | HRGMv2_3195_1_10 | 6429 | 7829 | + | 3.A.2.1.5 |
| pfam | HRGMv2_3195_1 | HRGMv2_3195_1_11 | 7826 | 8227 | + | ATP-synt_DE | ATP-synt_DE_N |
| CAZyme | HRGMv2_3195_1 | HRGMv2_3195_1_12 | 8302 | 10140 | - | GT2 | GT2 |
| CAZyme | HRGMv2_3195_1 | HRGMv2_3195_1_13 | 10152 | 12020 | - | GT2 | GT2 |
| TC | HRGMv2_3195_1 | HRGMv2_3195_1_14 | 12042 | 12812 | - | 3.A.1.103.1 |
| TC | HRGMv2_3195_1 | HRGMv2_3195_1_15 | 12827 | 13627 | - | 3.A.1.103.6 |
Gene ID: HRGMv2_3195_1_4
Type: TC
Location: 1843 - 2589 (+)
Type: TC
Location: 1843 - 2589 (+)
Gene ID: HRGMv2_3195_1_5
Type: TC
Location: 2638 - 2916 (+)
Type: TC
Location: 2638 - 2916 (+)
Gene ID: HRGMv2_3195_1_6
Type: pfam
Location: 2960 - 3460 (+)
Type: pfam
Location: 2960 - 3460 (+)
Gene ID: HRGMv2_3195_1_7
Type: pfam
Location: 3457 - 3996 (+)
Type: pfam
Location: 3457 - 3996 (+)
Gene ID: HRGMv2_3195_1_8
Type: TC
Location: 4009 - 5523 (+)
Type: TC
Location: 4009 - 5523 (+)
Gene ID: HRGMv2_3195_1_9
Type: TC
Location: 5545 - 6390 (+)
Type: TC
Location: 5545 - 6390 (+)
Gene ID: HRGMv2_3195_1_10
Type: TC
Location: 6429 - 7829 (+)
Type: TC
Location: 6429 - 7829 (+)
Gene ID: HRGMv2_3195_1_11
Type: pfam
Location: 7826 - 8227 (+)
Type: pfam
Location: 7826 - 8227 (+)
Gene ID: HRGMv2_3195_1_12
Type: CAZyme
Location: 8302 - 10140 (-)
Type: CAZyme
Location: 8302 - 10140 (-)
Gene ID: HRGMv2_3195_1_13
Type: CAZyme
Location: 10152 - 12020 (-)
Type: CAZyme
Location: 10152 - 12020 (-)
Gene ID: HRGMv2_3195_1_14
Type: TC
Location: 12042 - 12812 (-)
Type: TC
Location: 12042 - 12812 (-)
Gene ID: HRGMv2_3195_1_15
Type: TC
Location: 12827 - 13627 (-)
Type: TC
Location: 12827 - 13627 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.