Cluster: HRGMv2_3192_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3192
- CGC Family ID: CGCFAM_01508
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3192_9 | HRGMv2_3192_9_29 | 23223 | 24752 | - | 3.A.1.12.8 |
| TC | HRGMv2_3192_9 | HRGMv2_3192_9_30 | 24749 | 25384 | - | 3.A.1.12.8 |
| TC | HRGMv2_3192_9 | HRGMv2_3192_9_31 | 25389 | 26501 | - | 3.A.1.12.4 |
| CAZyme | HRGMv2_3192_9 | HRGMv2_3192_9_32 | 26859 | 28109 | + | GT2 |
| STP | HRGMv2_3192_9 | HRGMv2_3192_9_33 | 28332 | 29498 | + | Aminotran_1_2 |
| TC | HRGMv2_3192_9 | HRGMv2_3192_9_34 | 29718 | 30293 | + | 3.A.1.25.5 |
Gene ID: HRGMv2_3192_9_29
Type: TC
Location: 23223 - 24752 (-)
Type: TC
Location: 23223 - 24752 (-)
Gene ID: HRGMv2_3192_9_30
Type: TC
Location: 24749 - 25384 (-)
Type: TC
Location: 24749 - 25384 (-)
Gene ID: HRGMv2_3192_9_31
Type: TC
Location: 25389 - 26501 (-)
Type: TC
Location: 25389 - 26501 (-)
Gene ID: HRGMv2_3192_9_32
Type: CAZyme
Location: 26859 - 28109 (+)
Type: CAZyme
Location: 26859 - 28109 (+)
Gene ID: HRGMv2_3192_9_33
Type: STP
Location: 28332 - 29498 (+)
Type: STP
Location: 28332 - 29498 (+)
Gene ID: HRGMv2_3192_9_34
Type: TC
Location: 29718 - 30293 (+)
Type: TC
Location: 29718 - 30293 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Lawsonibacter
Species
Lawsonibacter sp905215425
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3192_9_29 | vegan > omnivore | 1.72782 | 0.04343 |
| HRGMv2_3192_9_29 | vegetarian > omnivore | 2.83172 | 0.00937 |
| HRGMv2_3192_9_29 | vegetarian > vegan | 1.10390 | 0.00560 |
| HRGMv2_3192_9_30 | vegetarian > vegan | 1.31998 | 0.00560 |
| HRGMv2_3192_9_32 | vegetarian > omnivore | 1.33260 | 0.00937 |
| HRGMv2_3192_9_33 | vegetarian > vegan | 1.01381 | 0.00560 |