Cluster: HRGMv2_3192_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3192
- CGC Family ID: CGCFAM_00087
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3192_3 | HRGMv2_3192_3_22 | 25742 | 26551 | - | 3.A.1.25.4 |
| TC | HRGMv2_3192_3 | HRGMv2_3192_3_23 | 26552 | 27415 | - | 3.A.1.26.7 |
| TC | HRGMv2_3192_3 | HRGMv2_3192_3_24 | 27470 | 28315 | - | 3.A.1.26.7 |
| pfam | HRGMv2_3192_3 | HRGMv2_3192_3_25 | 28332 | 29201 | - | Methyltransf_15 | Methyltrans_SAM |
| NULL(UNKNOWN) | HRGMv2_3192_3 | HRGMv2_3192_3_26 | 29423 | 30079 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3192_3 | HRGMv2_3192_3_27 | 30160 | 30804 | + | 1.A.62.2.1 |
| CAZyme | HRGMv2_3192_3 | HRGMv2_3192_3_28 | 30854 | 31897 | - | GT4 |
Gene ID: HRGMv2_3192_3_22
Type: TC
Location: 25742 - 26551 (-)
Type: TC
Location: 25742 - 26551 (-)
Gene ID: HRGMv2_3192_3_23
Type: TC
Location: 26552 - 27415 (-)
Type: TC
Location: 26552 - 27415 (-)
Gene ID: HRGMv2_3192_3_24
Type: TC
Location: 27470 - 28315 (-)
Type: TC
Location: 27470 - 28315 (-)
Gene ID: HRGMv2_3192_3_25
Type: pfam
Location: 28332 - 29201 (-)
Type: pfam
Location: 28332 - 29201 (-)
Gene ID: HRGMv2_3192_3_26
Type:
Location: 29423 - 30079 (+)
Type:
Location: 29423 - 30079 (+)
Gene ID: HRGMv2_3192_3_27
Type: TC
Location: 30160 - 30804 (+)
Type: TC
Location: 30160 - 30804 (+)
Gene ID: HRGMv2_3192_3_28
Type: CAZyme
Location: 30854 - 31897 (-)
Type: CAZyme
Location: 30854 - 31897 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Lawsonibacter
Species
Lawsonibacter sp905215425
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3192_3_26 | vegetarian > omnivore | 1.83638 | 0.00937 |
| HRGMv2_3192_3_26 | vegetarian > vegan | 1.08305 | 0.00560 |
| HRGMv2_3192_3_27 | vegetarian > vegan | 2.02081 | 0.00560 |
| HRGMv2_3192_3_28 | vegetarian > omnivore | 1.53232 | 0.00937 |
| HRGMv2_3192_3_28 | vegetarian > vegan | 2.32114 | 0.00560 |