Cluster: HRGMv2_3192_CGC3
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3192
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3192_2 | HRGMv2_3192_2_86 | 101320 | 103200 | + | GH13_39 |
| TF | HRGMv2_3192_2 | HRGMv2_3192_2_87 | 103291 | 104019 | + | HTH_3 |
| TC | HRGMv2_3192_2 | HRGMv2_3192_2_88 | 104185 | 104727 | - | 2.A.87.3.2 |
Gene ID: HRGMv2_3192_2_86
Type: CAZyme
Location: 101320 - 103200 (+)
Type: CAZyme
Location: 101320 - 103200 (+)
Gene ID: HRGMv2_3192_2_87
Type: TF
Location: 103291 - 104019 (+)
Type: TF
Location: 103291 - 104019 (+)
Gene ID: HRGMv2_3192_2_88
Type: TC
Location: 104185 - 104727 (-)
Type: TC
Location: 104185 - 104727 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Lawsonibacter
Species
Lawsonibacter sp905215425
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3192_2_87 | vegetarian > omnivore | 1.43871 | 0.00937 |
| HRGMv2_3192_2_88 | vegetarian > vegan | 1.17322 | 0.00560 |