Cluster: HRGMv2_3192_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3192
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3192_23 | HRGMv2_3192_23_21 | 25754 | 26608 | + | GH25 |
| pfam | HRGMv2_3192_23 | HRGMv2_3192_23_22 | 26637 | 27113 | + | SLFN_AlbA_2 |
| TF | HRGMv2_3192_23 | HRGMv2_3192_23_23 | 27415 | 27876 | + | MarR |
| TC | HRGMv2_3192_23 | HRGMv2_3192_23_24 | 27880 | 29250 | + | 2.A.66.1.7 |
Gene ID: HRGMv2_3192_23_21
Type: CAZyme
Location: 25754 - 26608 (+)
Type: CAZyme
Location: 25754 - 26608 (+)
Gene ID: HRGMv2_3192_23_22
Type: pfam
Location: 26637 - 27113 (+)
Type: pfam
Location: 26637 - 27113 (+)
Gene ID: HRGMv2_3192_23_23
Type: TF
Location: 27415 - 27876 (+)
Type: TF
Location: 27415 - 27876 (+)
Gene ID: HRGMv2_3192_23_24
Type: TC
Location: 27880 - 29250 (+)
Type: TC
Location: 27880 - 29250 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Lawsonibacter
Species
Lawsonibacter sp905215425
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3192_23_21 | vegetarian > omnivore | 1.11055 | 0.00937 |
| HRGMv2_3192_23_21 | vegetarian > vegan | 1.06647 | 0.00560 |
| HRGMv2_3192_23_22 | vegan > omnivore | 2.65065 | 0.01882 |
| HRGMv2_3192_23_22 | vegetarian > omnivore | 2.42726 | 0.00937 |