Cluster: HRGMv2_3192_CGC1
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3192
- CGC Family ID: CGCFAM_00085
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3192_1 | HRGMv2_3192_1_121 | 128664 | 129488 | - | 1.A.23.2.1 |
| TF | HRGMv2_3192_1 | HRGMv2_3192_1_122 | 129481 | 129873 | - | Fe_dep_repress |
| NULL(UNKNOWN) | HRGMv2_3192_1 | HRGMv2_3192_1_123 | 130157 | 130570 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3192_1 | HRGMv2_3192_1_124 | 130631 | 131476 | - | 3.A.1.15.5 |
| TC | HRGMv2_3192_1 | HRGMv2_3192_1_125 | 131473 | 132276 | - | 3.A.1.15.5 |
| TC | HRGMv2_3192_1 | HRGMv2_3192_1_126 | 132278 | 133228 | - | 3.A.1.15.3 |
| CAZyme | HRGMv2_3192_1 | HRGMv2_3192_1_127 | 133254 | 135461 | - | GT4 |
| pfam | HRGMv2_3192_1 | HRGMv2_3192_1_128 | 135500 | 135991 | - | DUF4330 |
| pfam | HRGMv2_3192_1 | HRGMv2_3192_1_129 | 135988 | 136500 | - | DUF4330 |
| CAZyme | HRGMv2_3192_1 | HRGMv2_3192_1_130 | 136502 | 137620 | - | GT4 |
| TC | HRGMv2_3192_1 | HRGMv2_3192_1_131 | 137617 | 139077 | - | 9.B.67.1.1 |
| TC | HRGMv2_3192_1 | HRGMv2_3192_1_132 | 139081 | 140637 | - | 2.A.66.4.7 |
Gene ID: HRGMv2_3192_1_121
Type: TC
Location: 128664 - 129488 (-)
Type: TC
Location: 128664 - 129488 (-)
Gene ID: HRGMv2_3192_1_122
Type: TF
Location: 129481 - 129873 (-)
Type: TF
Location: 129481 - 129873 (-)
Gene ID: HRGMv2_3192_1_123
Type:
Location: 130157 - 130570 (+)
Type:
Location: 130157 - 130570 (+)
Gene ID: HRGMv2_3192_1_124
Type: TC
Location: 130631 - 131476 (-)
Type: TC
Location: 130631 - 131476 (-)
Gene ID: HRGMv2_3192_1_125
Type: TC
Location: 131473 - 132276 (-)
Type: TC
Location: 131473 - 132276 (-)
Gene ID: HRGMv2_3192_1_126
Type: TC
Location: 132278 - 133228 (-)
Type: TC
Location: 132278 - 133228 (-)
Gene ID: HRGMv2_3192_1_127
Type: CAZyme
Location: 133254 - 135461 (-)
Type: CAZyme
Location: 133254 - 135461 (-)
Gene ID: HRGMv2_3192_1_128
Type: pfam
Location: 135500 - 135991 (-)
Type: pfam
Location: 135500 - 135991 (-)
Gene ID: HRGMv2_3192_1_129
Type: pfam
Location: 135988 - 136500 (-)
Type: pfam
Location: 135988 - 136500 (-)
Gene ID: HRGMv2_3192_1_130
Type: CAZyme
Location: 136502 - 137620 (-)
Type: CAZyme
Location: 136502 - 137620 (-)
Gene ID: HRGMv2_3192_1_131
Type: TC
Location: 137617 - 139077 (-)
Type: TC
Location: 137617 - 139077 (-)
Gene ID: HRGMv2_3192_1_132
Type: TC
Location: 139081 - 140637 (-)
Type: TC
Location: 139081 - 140637 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Lawsonibacter
Species
Lawsonibacter sp905215425
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3192_1_122 | vegetarian > omnivore | 1.11382 | 0.00937 |
| HRGMv2_3192_1_122 | vegetarian > vegan | 1.78158 | 0.00560 |
| HRGMv2_3192_1_126 | vegetarian > vegan | 1.33848 | 0.00560 |
| HRGMv2_3192_1_127 | vegetarian > vegan | 1.43209 | 0.00560 |
| HRGMv2_3192_1_128 | vegetarian > omnivore | 2.79102 | 0.00937 |
| HRGMv2_3192_1_128 | vegetarian > vegan | 1.17415 | 0.00560 |
| HRGMv2_3192_1_129 | vegetarian > omnivore | 2.81129 | 0.00937 |
| HRGMv2_3192_1_129 | vegetarian > vegan | 1.15102 | 0.00560 |
| HRGMv2_3192_1_130 | vegetarian > vegan | 1.83108 | 0.00560 |
| HRGMv2_3192_1_131 | vegetarian > vegan | 1.45777 | 0.00560 |
| HRGMv2_3192_1_132 | vegetarian > vegan | 1.01595 | 0.00560 |