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Cluster: HRGMv2_3189_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3189_2 HRGMv2_3189_2_29 25288 27297 - GH163
pfam HRGMv2_3189_2 HRGMv2_3189_2_30 27631 28602 + ROK
TC HRGMv2_3189_2 HRGMv2_3189_2_31 28599 30164 + 2.A.2.3.6
CAZyme HRGMv2_3189_2 HRGMv2_3189_2_32 30203 31606 + GH18
pfam HRGMv2_3189_2 HRGMv2_3189_2_33 31636 32955 + Metallophos
CAZyme HRGMv2_3189_2 HRGMv2_3189_2_34 32976 34649 + GH36
pfam HRGMv2_3189_2 HRGMv2_3189_2_35 34679 35926 + Metallophos
CAZyme HRGMv2_3189_2 HRGMv2_3189_2_36 36102 37262 + GH63
NULL(UNKNOWN) HRGMv2_3189_2 HRGMv2_3189_2_37 37297 39252 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3189_2 HRGMv2_3189_2_38 39265 42276 + GH2
Gene ID: HRGMv2_3189_2_29
Type: CAZyme
Location: 25288 - 27297 (-)
Gene ID: HRGMv2_3189_2_30
Type: pfam
Location: 27631 - 28602 (+)
Gene ID: HRGMv2_3189_2_31
Type: TC
Location: 28599 - 30164 (+)
Gene ID: HRGMv2_3189_2_32
Type: CAZyme
Location: 30203 - 31606 (+)
Gene ID: HRGMv2_3189_2_33
Type: pfam
Location: 31636 - 32955 (+)
Gene ID: HRGMv2_3189_2_34
Type: CAZyme
Location: 32976 - 34649 (+)
Gene ID: HRGMv2_3189_2_35
Type: pfam
Location: 34679 - 35926 (+)
Gene ID: HRGMv2_3189_2_36
Type: CAZyme
Location: 36102 - 37262 (+)
Gene ID: HRGMv2_3189_2_37
Type:
Location: 37297 - 39252 (+)
Gene ID: HRGMv2_3189_2_38
Type: CAZyme
Location: 39265 - 42276 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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