Cluster: HRGMv2_3189_CGC29
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3189
- CGC Family ID: CGCFAM_01938
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3189_18 | HRGMv2_3189_18_2 | 1407 | 3398 | + | GH18 |
| pfam | HRGMv2_3189_18 | HRGMv2_3189_18_3 | 3480 | 5339 | - | Radical_SAM | Radical_SAM_N | DUF3362 |
| TC | HRGMv2_3189_18 | HRGMv2_3189_18_4 | 5765 | 7171 | + | 1.A.26.1.3 |
| STP | HRGMv2_3189_18 | HRGMv2_3189_18_5 | 7217 | 7879 | - | AraC_binding |
| CAZyme | HRGMv2_3189_18 | HRGMv2_3189_18_6 | 7915 | 10662 | + | GH95 |
| TC | HRGMv2_3189_18 | HRGMv2_3189_18_7 | 10724 | 12133 | - | 2.A.2.3.1 |
Gene ID: HRGMv2_3189_18_2
Type: CAZyme
Location: 1407 - 3398 (+)
Type: CAZyme
Location: 1407 - 3398 (+)
Gene ID: HRGMv2_3189_18_3
Type: pfam
Location: 3480 - 5339 (-)
Type: pfam
Location: 3480 - 5339 (-)
Gene ID: HRGMv2_3189_18_4
Type: TC
Location: 5765 - 7171 (+)
Type: TC
Location: 5765 - 7171 (+)
Gene ID: HRGMv2_3189_18_5
Type: STP
Location: 7217 - 7879 (-)
Type: STP
Location: 7217 - 7879 (-)
Gene ID: HRGMv2_3189_18_6
Type: CAZyme
Location: 7915 - 10662 (+)
Type: CAZyme
Location: 7915 - 10662 (+)
Gene ID: HRGMv2_3189_18_7
Type: TC
Location: 10724 - 12133 (-)
Type: TC
Location: 10724 - 12133 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Eubacterium_R
Species
Eubacterium_R sp900547915
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.