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Cluster: HRGMv2_3187_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3187_3 HRGMv2_3187_3_47 50210 51019 - 3.A.1.34.1
TC HRGMv2_3187_3 HRGMv2_3187_3_48 51019 51921 - 3.A.1.34.1
TC HRGMv2_3187_3 HRGMv2_3187_3_49 51993 52973 - 3.A.1.34.1
pfam HRGMv2_3187_3 HRGMv2_3187_3_50 53102 54142 - DAHP_synth_1
CAZyme HRGMv2_3187_3 HRGMv2_3187_3_51 54330 55103 + GH25
TC HRGMv2_3187_3 HRGMv2_3187_3_52 55231 55974 - 3.A.1.17.13
TC HRGMv2_3187_3 HRGMv2_3187_3_53 55978 57003 - 3.A.1.17.8
TC HRGMv2_3187_3 HRGMv2_3187_3_54 56993 57781 - 3.A.1.17.8
Gene ID: HRGMv2_3187_3_47
Type: TC
Location: 50210 - 51019 (-)
Gene ID: HRGMv2_3187_3_48
Type: TC
Location: 51019 - 51921 (-)
Gene ID: HRGMv2_3187_3_49
Type: TC
Location: 51993 - 52973 (-)
Gene ID: HRGMv2_3187_3_50
Type: pfam
Location: 53102 - 54142 (-)
Gene ID: HRGMv2_3187_3_51
Type: CAZyme
Location: 54330 - 55103 (+)
Gene ID: HRGMv2_3187_3_52
Type: TC
Location: 55231 - 55974 (-)
Gene ID: HRGMv2_3187_3_53
Type: TC
Location: 55978 - 57003 (-)
Gene ID: HRGMv2_3187_3_54
Type: TC
Location: 56993 - 57781 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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