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Cluster: HRGMv2_3187_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3187_2 HRGMv2_3187_2_208 216549 217358 - 3.A.1.3.25
TC HRGMv2_3187_2 HRGMv2_3187_2_209 217363 218010 - 3.A.1.3.14
TC HRGMv2_3187_2 HRGMv2_3187_2_210 218077 218910 - 3.A.1.3.12
NULL(UNKNOWN) HRGMv2_3187_2 HRGMv2_3187_2_211 219101 219208 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3187_2 HRGMv2_3187_2_212 219229 224694 - GH33
peptidase HRGMv2_3187_2 HRGMv2_3187_2_213 225044 226105 + S09.UPW
STP HRGMv2_3187_2 HRGMv2_3187_2_214 226236 226682 - Sigma70_r2
CAZyme HRGMv2_3187_2 HRGMv2_3187_2_215 226919 228001 + GT2
pfam HRGMv2_3187_2 HRGMv2_3187_2_216 228057 229589 + Collagen | Collagen | BclA_C
STP HRGMv2_3187_2 HRGMv2_3187_2_217 229629 230306 - AraC_binding
CAZyme HRGMv2_3187_2 HRGMv2_3187_2_218 230409 233093 + GH95
Gene ID: HRGMv2_3187_2_208
Type: TC
Location: 216549 - 217358 (-)
Gene ID: HRGMv2_3187_2_209
Type: TC
Location: 217363 - 218010 (-)
Gene ID: HRGMv2_3187_2_210
Type: TC
Location: 218077 - 218910 (-)
Gene ID: HRGMv2_3187_2_211
Type:
Location: 219101 - 219208 (-)
Gene ID: HRGMv2_3187_2_212
Type: CAZyme
Location: 219229 - 224694 (-)
Gene ID: HRGMv2_3187_2_213
Type: peptidase
Location: 225044 - 226105 (+)
Gene ID: HRGMv2_3187_2_214
Type: STP
Location: 226236 - 226682 (-)
Gene ID: HRGMv2_3187_2_215
Type: CAZyme
Location: 226919 - 228001 (+)
Gene ID: HRGMv2_3187_2_216
Type: pfam
Location: 228057 - 229589 (+)
Gene ID: HRGMv2_3187_2_217
Type: STP
Location: 229629 - 230306 (-)
Gene ID: HRGMv2_3187_2_218
Type: CAZyme
Location: 230409 - 233093 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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