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Cluster: HRGMv2_3186_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3186_34 HRGMv2_3186_34_11 13339 14169 - 3.A.1.132.3
TC HRGMv2_3186_34 HRGMv2_3186_34_12 14269 16287 - 3.A.1.120.4
pfam HRGMv2_3186_34 HRGMv2_3186_34_13 16280 16882 - Toprim | DUF4093 | Toprim_4
pfam HRGMv2_3186_34 HRGMv2_3186_34_14 16875 17924 - DNA_pol3_delta | DNA_pol3_delta_C
TC HRGMv2_3186_34 HRGMv2_3186_34_15 17930 20182 - 3.A.11.1.1
pfam HRGMv2_3186_34 HRGMv2_3186_34_16 20282 20620 - HIT | DcpS_C
pfam HRGMv2_3186_34 HRGMv2_3186_34_17 20651 23293 - tRNA-synt_2c | DHHA1 | tRNA_SAD
CAZyme HRGMv2_3186_34 HRGMv2_3186_34_18 23681 24829 - GT4
CAZyme HRGMv2_3186_34 HRGMv2_3186_34_19 24826 27042 - GT4
Gene ID: HRGMv2_3186_34_11
Type: TC
Location: 13339 - 14169 (-)
Gene ID: HRGMv2_3186_34_12
Type: TC
Location: 14269 - 16287 (-)
Gene ID: HRGMv2_3186_34_13
Type: pfam
Location: 16280 - 16882 (-)
Gene ID: HRGMv2_3186_34_14
Type: pfam
Location: 16875 - 17924 (-)
Gene ID: HRGMv2_3186_34_15
Type: TC
Location: 17930 - 20182 (-)
Gene ID: HRGMv2_3186_34_16
Type: pfam
Location: 20282 - 20620 (-)
Gene ID: HRGMv2_3186_34_17
Type: pfam
Location: 20651 - 23293 (-)
Gene ID: HRGMv2_3186_34_18
Type: CAZyme
Location: 23681 - 24829 (-)
Gene ID: HRGMv2_3186_34_19
Type: CAZyme
Location: 24826 - 27042 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3186_34_19 vegetarian > vegan 1.01652 0.00229

🧭 Explore Read Mapping of CGC

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