Cluster: HRGMv2_3179_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3179
- CGC Family ID: CGCFAM_00804
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3179_79 | HRGMv2_3179_79_5 | 3541 | 4404 | - | 2.A.115.1.5 |
| CAZyme | HRGMv2_3179_79 | HRGMv2_3179_79_6 | 4451 | 6100 | - | GH18 |
| STP | HRGMv2_3179_79 | HRGMv2_3179_79_7 | 6400 | 6978 | + | Pribosyltran |
| pfam | HRGMv2_3179_79 | HRGMv2_3179_79_8 | 7110 | 8306 | + | Bmp |
| TC | HRGMv2_3179_79 | HRGMv2_3179_79_9 | 8409 | 9167 | + | 3.A.1.2.12 |
Gene ID: HRGMv2_3179_79_5
Type: TC
Location: 3541 - 4404 (-)
Type: TC
Location: 3541 - 4404 (-)
Gene ID: HRGMv2_3179_79_6
Type: CAZyme
Location: 4451 - 6100 (-)
Type: CAZyme
Location: 4451 - 6100 (-)
Gene ID: HRGMv2_3179_79_7
Type: STP
Location: 6400 - 6978 (+)
Type: STP
Location: 6400 - 6978 (+)
Gene ID: HRGMv2_3179_79_8
Type: pfam
Location: 7110 - 8306 (+)
Type: pfam
Location: 7110 - 8306 (+)
Gene ID: HRGMv2_3179_79_9
Type: TC
Location: 8409 - 9167 (+)
Type: TC
Location: 8409 - 9167 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Pseudoflavonifractor_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.