Cluster: HRGMv2_3179_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3179
- CGC Family ID: CGCFAM_04081
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3179_64 | HRGMv2_3179_64_1 | 3 | 1241 | - | 2.A.40.2.1 |
| pfam | HRGMv2_3179_64 | HRGMv2_3179_64_2 | 1787 | 3181 | + | tRNA-synt_2 | tRNA_anti-codon |
| CAZyme | HRGMv2_3179_64 | HRGMv2_3179_64_3 | 3316 | 4383 | - | GH3 |
| pfam | HRGMv2_3179_64 | HRGMv2_3179_64_4 | 4569 | 6623 | - | RNB | OB_RNB | CSD2 |
| pfam | HRGMv2_3179_64 | HRGMv2_3179_64_5 | 6747 | 7175 | - | ACPS |
| TC | HRGMv2_3179_64 | HRGMv2_3179_64_6 | 7508 | 8275 | + | 3.A.1.134.12 |
| TC | HRGMv2_3179_64 | HRGMv2_3179_64_7 | 8265 | 10298 | + | 3.A.1.134.12 |
Gene ID: HRGMv2_3179_64_1
Type: TC
Location: 3 - 1241 (-)
Type: TC
Location: 3 - 1241 (-)
Gene ID: HRGMv2_3179_64_2
Type: pfam
Location: 1787 - 3181 (+)
Type: pfam
Location: 1787 - 3181 (+)
Gene ID: HRGMv2_3179_64_3
Type: CAZyme
Location: 3316 - 4383 (-)
Type: CAZyme
Location: 3316 - 4383 (-)
Gene ID: HRGMv2_3179_64_4
Type: pfam
Location: 4569 - 6623 (-)
Type: pfam
Location: 4569 - 6623 (-)
Gene ID: HRGMv2_3179_64_5
Type: pfam
Location: 6747 - 7175 (-)
Type: pfam
Location: 6747 - 7175 (-)
Gene ID: HRGMv2_3179_64_6
Type: TC
Location: 7508 - 8275 (+)
Type: TC
Location: 7508 - 8275 (+)
Gene ID: HRGMv2_3179_64_7
Type: TC
Location: 8265 - 10298 (+)
Type: TC
Location: 8265 - 10298 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Pseudoflavonifractor_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.