Cluster: HRGMv2_3179_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3179
- CGC Family ID: CGCFAM_00751
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3179_22 | HRGMv2_3179_22_9 | 8388 | 10247 | + | 1.A.33.1.4 |
| sulfatase | HRGMv2_3179_22 | HRGMv2_3179_22_10 | 10597 | 11769 | + | S1_7 |
| CAZyme | HRGMv2_3179_22 | HRGMv2_3179_22_11 | 11852 | 13831 | + | GT39 |
| pfam | HRGMv2_3179_22 | HRGMv2_3179_22_12 | 13850 | 14644 | + | PHP |
| pfam | HRGMv2_3179_22 | HRGMv2_3179_22_13 | 14692 | 15129 | + | LacAB_rpiB |
| TC | HRGMv2_3179_22 | HRGMv2_3179_22_14 | 15381 | 16616 | - | 2.A.1.31.2 |
Gene ID: HRGMv2_3179_22_9
Type: TC
Location: 8388 - 10247 (+)
Type: TC
Location: 8388 - 10247 (+)
Gene ID: HRGMv2_3179_22_10
Type: sulfatase
Location: 10597 - 11769 (+)
Type: sulfatase
Location: 10597 - 11769 (+)
Gene ID: HRGMv2_3179_22_11
Type: CAZyme
Location: 11852 - 13831 (+)
Type: CAZyme
Location: 11852 - 13831 (+)
Gene ID: HRGMv2_3179_22_12
Type: pfam
Location: 13850 - 14644 (+)
Type: pfam
Location: 13850 - 14644 (+)
Gene ID: HRGMv2_3179_22_13
Type: pfam
Location: 14692 - 15129 (+)
Type: pfam
Location: 14692 - 15129 (+)
Gene ID: HRGMv2_3179_22_14
Type: TC
Location: 15381 - 16616 (-)
Type: TC
Location: 15381 - 16616 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Pseudoflavonifractor_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.