Cluster: HRGMv2_3179_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3179
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3179_17 | HRGMv2_3179_17_16 | 16019 | 16825 | + | 3.A.1.34.1 |
| CAZyme | HRGMv2_3179_17 | HRGMv2_3179_17_17 | 16988 | 17947 | + | GT2 |
| pfam | HRGMv2_3179_17 | HRGMv2_3179_17_18 | 17934 | 18347 | + | GtrA_DPMS_TM |
| sulfatase | HRGMv2_3179_17 | HRGMv2_3179_17_19 | 18385 | 20151 | + | S1_20 |
| TC | HRGMv2_3179_17 | HRGMv2_3179_17_20 | 20193 | 21236 | - | 3.A.1.11.2 |
Gene ID: HRGMv2_3179_17_16
Type: TC
Location: 16019 - 16825 (+)
Type: TC
Location: 16019 - 16825 (+)
Gene ID: HRGMv2_3179_17_17
Type: CAZyme
Location: 16988 - 17947 (+)
Type: CAZyme
Location: 16988 - 17947 (+)
Gene ID: HRGMv2_3179_17_18
Type: pfam
Location: 17934 - 18347 (+)
Type: pfam
Location: 17934 - 18347 (+)
Gene ID: HRGMv2_3179_17_19
Type: sulfatase
Location: 18385 - 20151 (+)
Type: sulfatase
Location: 18385 - 20151 (+)
Gene ID: HRGMv2_3179_17_20
Type: TC
Location: 20193 - 21236 (-)
Type: TC
Location: 20193 - 21236 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Pseudoflavonifractor_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.