Cluster: HRGMv2_3179_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3179
- CGC Family ID: CGCFAM_02239
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3179_158 | HRGMv2_3179_158_1 | 331 | 1458 | - | 3.A.1.1.26 |
| CAZyme | HRGMv2_3179_158 | HRGMv2_3179_158_2 | 1706 | 2833 | - | CE9 |
| pfam | HRGMv2_3179_158 | HRGMv2_3179_158_3 | 2824 | 3576 | - | Glucosamine_iso |
| pfam | HRGMv2_3179_158 | HRGMv2_3179_158_4 | 3615 | 4520 | - | DHDPS |
| TC | HRGMv2_3179_158 | HRGMv2_3179_158_5 | 4664 | 5395 | - | 3.A.1.1.39 |
Gene ID: HRGMv2_3179_158_1
Type: TC
Location: 331 - 1458 (-)
Type: TC
Location: 331 - 1458 (-)
Gene ID: HRGMv2_3179_158_2
Type: CAZyme
Location: 1706 - 2833 (-)
Type: CAZyme
Location: 1706 - 2833 (-)
Gene ID: HRGMv2_3179_158_3
Type: pfam
Location: 2824 - 3576 (-)
Type: pfam
Location: 2824 - 3576 (-)
Gene ID: HRGMv2_3179_158_4
Type: pfam
Location: 3615 - 4520 (-)
Type: pfam
Location: 3615 - 4520 (-)
Gene ID: HRGMv2_3179_158_5
Type: TC
Location: 4664 - 5395 (-)
Type: TC
Location: 4664 - 5395 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Pseudoflavonifractor_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.