Cluster: HRGMv2_3179_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3179
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3179_116 | HRGMv2_3179_116_1 | 2 | 454 | - | CE4 |
| TC | HRGMv2_3179_116 | HRGMv2_3179_116_2 | 613 | 1365 | - | 9.B.158.1.1 |
| pfam | HRGMv2_3179_116 | HRGMv2_3179_116_3 | 1544 | 2719 | + | ROK |
| pfam | HRGMv2_3179_116 | HRGMv2_3179_116_4 | 2738 | 3682 | + | GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3 |
| TC | HRGMv2_3179_116 | HRGMv2_3179_116_5 | 3730 | 5409 | + | 3.A.1.5.2 |
| TC | HRGMv2_3179_116 | HRGMv2_3179_116_6 | 5604 | 6542 | + | 3.A.1.5.19 |
Gene ID: HRGMv2_3179_116_1
Type: CAZyme
Location: 2 - 454 (-)
Type: CAZyme
Location: 2 - 454 (-)
Gene ID: HRGMv2_3179_116_2
Type: TC
Location: 613 - 1365 (-)
Type: TC
Location: 613 - 1365 (-)
Gene ID: HRGMv2_3179_116_3
Type: pfam
Location: 1544 - 2719 (+)
Type: pfam
Location: 1544 - 2719 (+)
Gene ID: HRGMv2_3179_116_4
Type: pfam
Location: 2738 - 3682 (+)
Type: pfam
Location: 2738 - 3682 (+)
Gene ID: HRGMv2_3179_116_5
Type: TC
Location: 3730 - 5409 (+)
Type: TC
Location: 3730 - 5409 (+)
Gene ID: HRGMv2_3179_116_6
Type: TC
Location: 5604 - 6542 (+)
Type: TC
Location: 5604 - 6542 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Pseudoflavonifractor_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.