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Cluster: HRGMv2_3179_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3179_8 HRGMv2_3179_8_3 1600 2967 - 2.A.8.1.2
TF HRGMv2_3179_8 HRGMv2_3179_8_4 3229 5022 + HTH_8
pfam HRGMv2_3179_8 HRGMv2_3179_8_5 5269 7743 + SLH | SLH
TC HRGMv2_3179_8 HRGMv2_3179_8_6 7881 9272 + 9.B.18.1.1
pfam HRGMv2_3179_8 HRGMv2_3179_8_7 9289 11742 + Wzy_C
NULL(UNKNOWN) HRGMv2_3179_8 HRGMv2_3179_8_8 11867 12949 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3179_8 HRGMv2_3179_8_9 13129 14265 + GT4
pfam HRGMv2_3179_8 HRGMv2_3179_8_10 14381 15322 - Big_2 | Big_2
TC HRGMv2_3179_8 HRGMv2_3179_8_11 15538 16977 + 3.A.24.3.1
TC HRGMv2_3179_8 HRGMv2_3179_8_12 16970 19255 + 3.A.11.1.2
Gene ID: HRGMv2_3179_8_3
Type: TC
Location: 1600 - 2967 (-)
Gene ID: HRGMv2_3179_8_4
Type: TF
Location: 3229 - 5022 (+)
Gene ID: HRGMv2_3179_8_5
Type: pfam
Location: 5269 - 7743 (+)
Gene ID: HRGMv2_3179_8_6
Type: TC
Location: 7881 - 9272 (+)
Gene ID: HRGMv2_3179_8_7
Type: pfam
Location: 9289 - 11742 (+)
Gene ID: HRGMv2_3179_8_8
Type:
Location: 11867 - 12949 (+)
Gene ID: HRGMv2_3179_8_9
Type: CAZyme
Location: 13129 - 14265 (+)
Gene ID: HRGMv2_3179_8_10
Type: pfam
Location: 14381 - 15322 (-)
Gene ID: HRGMv2_3179_8_11
Type: TC
Location: 15538 - 16977 (+)
Gene ID: HRGMv2_3179_8_12
Type: TC
Location: 16970 - 19255 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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