Cluster: HRGMv2_3173_CGC4
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_3173
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3173_1 | HRGMv2_3173_1_130 | 145003 | 146505 | - | GH77 |
| pfam | HRGMv2_3173_1 | HRGMv2_3173_1_131 | 146761 | 147873 | + | Ldh_2 |
| pfam | HRGMv2_3173_1 | HRGMv2_3173_1_132 | 147940 | 149112 | + | malic | malic | Malic_M |
| TC | HRGMv2_3173_1 | HRGMv2_3173_1_133 | 149204 | 150691 | - | 2.A.66.2.16 |
| CAZyme | HRGMv2_3173_1 | HRGMv2_3173_1_134 | 150692 | 151678 | - | GT2 |
| pfam | HRGMv2_3173_1 | HRGMv2_3173_1_135 | 151675 | 153114 | - | Wzy_C |
| CAZyme | HRGMv2_3173_1 | HRGMv2_3173_1_136 | 153118 | 154203 | - | GT4 |
| CAZyme | HRGMv2_3173_1 | HRGMv2_3173_1_137 | 154206 | 155189 | - | GT2 |
| CAZyme | HRGMv2_3173_1 | HRGMv2_3173_1_138 | 155182 | 156093 | - | GT2 |
| pfam | HRGMv2_3173_1 | HRGMv2_3173_1_139 | 156096 | 157193 | - | Amino_oxidase | GLF | NAD_binding_8 |
| pfam | HRGMv2_3173_1 | HRGMv2_3173_1_140 | 157524 | 158582 | + | LytR_cpsA_psr |
| TC | HRGMv2_3173_1 | HRGMv2_3173_1_141 | 158614 | 160068 | + | 9.B.18.1.2 |
| CAZyme | HRGMv2_3173_1 | HRGMv2_3173_1_142 | 160094 | 160849 | + | GT111 |
| pfam | HRGMv2_3173_1 | HRGMv2_3173_1_143 | 161112 | 162170 | - | YceG |
| TC | HRGMv2_3173_1 | HRGMv2_3173_1_144 | 162339 | 164180 | + | 3.A.1.106.9 |
Gene ID: HRGMv2_3173_1_130
Type: CAZyme
Location: 145003 - 146505 (-)
Type: CAZyme
Location: 145003 - 146505 (-)
Gene ID: HRGMv2_3173_1_131
Type: pfam
Location: 146761 - 147873 (+)
Type: pfam
Location: 146761 - 147873 (+)
Gene ID: HRGMv2_3173_1_132
Type: pfam
Location: 147940 - 149112 (+)
Type: pfam
Location: 147940 - 149112 (+)
Gene ID: HRGMv2_3173_1_133
Type: TC
Location: 149204 - 150691 (-)
Type: TC
Location: 149204 - 150691 (-)
Gene ID: HRGMv2_3173_1_134
Type: CAZyme
Location: 150692 - 151678 (-)
Type: CAZyme
Location: 150692 - 151678 (-)
Gene ID: HRGMv2_3173_1_135
Type: pfam
Location: 151675 - 153114 (-)
Type: pfam
Location: 151675 - 153114 (-)
Gene ID: HRGMv2_3173_1_136
Type: CAZyme
Location: 153118 - 154203 (-)
Type: CAZyme
Location: 153118 - 154203 (-)
Gene ID: HRGMv2_3173_1_137
Type: CAZyme
Location: 154206 - 155189 (-)
Type: CAZyme
Location: 154206 - 155189 (-)
Gene ID: HRGMv2_3173_1_138
Type: CAZyme
Location: 155182 - 156093 (-)
Type: CAZyme
Location: 155182 - 156093 (-)
Gene ID: HRGMv2_3173_1_139
Type: pfam
Location: 156096 - 157193 (-)
Type: pfam
Location: 156096 - 157193 (-)
Gene ID: HRGMv2_3173_1_140
Type: pfam
Location: 157524 - 158582 (+)
Type: pfam
Location: 157524 - 158582 (+)
Gene ID: HRGMv2_3173_1_141
Type: TC
Location: 158614 - 160068 (+)
Type: TC
Location: 158614 - 160068 (+)
Gene ID: HRGMv2_3173_1_142
Type: CAZyme
Location: 160094 - 160849 (+)
Type: CAZyme
Location: 160094 - 160849 (+)
Gene ID: HRGMv2_3173_1_143
Type: pfam
Location: 161112 - 162170 (-)
Type: pfam
Location: 161112 - 162170 (-)
Gene ID: HRGMv2_3173_1_144
Type: TC
Location: 162339 - 164180 (+)
Type: TC
Location: 162339 - 164180 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
QAKW01
Genus
RGIG9041
Species
RGIG9041 sp902492505
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.