Cluster: HRGMv2_3168_CGC14
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: HRGMv2_3168
- CGC Family ID: CGCFAM_00004
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3168_49 | HRGMv2_3168_49_4 | 3578 | 5728 | + | CBM48 | GH13_9 |
| pfam | HRGMv2_3168_49 | HRGMv2_3168_49_5 | 5790 | 7013 | + | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_3168_49 | HRGMv2_3168_49_6 | 7006 | 8118 | + | NTP_transferase | Hexapep_GlmU |
| CAZyme | HRGMv2_3168_49 | HRGMv2_3168_49_7 | 8163 | 9590 | + | GT5 |
| pfam | HRGMv2_3168_49 | HRGMv2_3168_49_8 | 9920 | 10579 | - | ABC2_membrane_5 |
| TC | HRGMv2_3168_49 | HRGMv2_3168_49_9 | 10563 | 11432 | - | 3.A.1.149.1 |
Gene ID: HRGMv2_3168_49_4
Type: CAZyme
Location: 3578 - 5728 (+)
Type: CAZyme
Location: 3578 - 5728 (+)
Gene ID: HRGMv2_3168_49_5
Type: pfam
Location: 5790 - 7013 (+)
Type: pfam
Location: 5790 - 7013 (+)
Gene ID: HRGMv2_3168_49_6
Type: pfam
Location: 7006 - 8118 (+)
Type: pfam
Location: 7006 - 8118 (+)
Gene ID: HRGMv2_3168_49_7
Type: CAZyme
Location: 8163 - 9590 (+)
Type: CAZyme
Location: 8163 - 9590 (+)
Gene ID: HRGMv2_3168_49_8
Type: pfam
Location: 9920 - 10579 (-)
Type: pfam
Location: 9920 - 10579 (-)
Gene ID: HRGMv2_3168_49_9
Type: TC
Location: 10563 - 11432 (-)
Type: TC
Location: 10563 - 11432 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Negativibacillus
Species
Negativibacillus sp905197685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.