dbCAN Logo

Cluster: HRGMv2_3168_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3168_37 HRGMv2_3168_37_4 4549 5628 + 3.A.1.1.16
TC HRGMv2_3168_37 HRGMv2_3168_37_5 5618 6544 + 3.A.1.1.4
TC HRGMv2_3168_37 HRGMv2_3168_37_6 6541 7374 + 3.A.1.1.11
TC HRGMv2_3168_37 HRGMv2_3168_37_7 7435 8811 + 3.A.1.1.16
TC HRGMv2_3168_37 HRGMv2_3168_37_8 8860 10698 - 3.A.1.106.3
TC HRGMv2_3168_37 HRGMv2_3168_37_9 10714 12570 - 3.A.1.106.14
pfam HRGMv2_3168_37 HRGMv2_3168_37_10 13067 13339 - Se_S_carrier
CAZyme HRGMv2_3168_37 HRGMv2_3168_37_11 13496 15760 - GT35
CAZyme HRGMv2_3168_37 HRGMv2_3168_37_12 15774 17300 - GH77
pfam HRGMv2_3168_37 HRGMv2_3168_37_13 17544 18539 + DUF4349
TC HRGMv2_3168_37 HRGMv2_3168_37_14 18660 19751 + 1.A.23.4.2
Gene ID: HRGMv2_3168_37_4
Type: TC
Location: 4549 - 5628 (+)
Gene ID: HRGMv2_3168_37_5
Type: TC
Location: 5618 - 6544 (+)
Gene ID: HRGMv2_3168_37_6
Type: TC
Location: 6541 - 7374 (+)
Gene ID: HRGMv2_3168_37_7
Type: TC
Location: 7435 - 8811 (+)
Gene ID: HRGMv2_3168_37_8
Type: TC
Location: 8860 - 10698 (-)
Gene ID: HRGMv2_3168_37_9
Type: TC
Location: 10714 - 12570 (-)
Gene ID: HRGMv2_3168_37_10
Type: pfam
Location: 13067 - 13339 (-)
Gene ID: HRGMv2_3168_37_11
Type: CAZyme
Location: 13496 - 15760 (-)
Gene ID: HRGMv2_3168_37_12
Type: CAZyme
Location: 15774 - 17300 (-)
Gene ID: HRGMv2_3168_37_13
Type: pfam
Location: 17544 - 18539 (+)
Gene ID: HRGMv2_3168_37_14
Type: TC
Location: 18660 - 19751 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List