Cluster: HRGMv2_3168_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3168
- CGC Family ID: CGCFAM_04712
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3168_34 | HRGMv2_3168_34_13 | 9296 | 9811 | - | 3.A.1.26.5 |
| TF | HRGMv2_3168_34 | HRGMv2_3168_34_14 | 10314 | 10994 | + | Trans_reg_C |
| STP | HRGMv2_3168_34 | HRGMv2_3168_34_15 | 10984 | 12030 | + | HATPase_c | HisKA |
| TC | HRGMv2_3168_34 | HRGMv2_3168_34_16 | 12171 | 12764 | + | 4.F.1.1.7 |
| TC | HRGMv2_3168_34 | HRGMv2_3168_34_17 | 12825 | 13436 | + | 9.B.31.1.1 |
| CAZyme | HRGMv2_3168_34 | HRGMv2_3168_34_18 | 13424 | 14560 | + | GT28 |
Gene ID: HRGMv2_3168_34_13
Type: TC
Location: 9296 - 9811 (-)
Type: TC
Location: 9296 - 9811 (-)
Gene ID: HRGMv2_3168_34_14
Type: TF
Location: 10314 - 10994 (+)
Type: TF
Location: 10314 - 10994 (+)
Gene ID: HRGMv2_3168_34_15
Type: STP
Location: 10984 - 12030 (+)
Type: STP
Location: 10984 - 12030 (+)
Gene ID: HRGMv2_3168_34_16
Type: TC
Location: 12171 - 12764 (+)
Type: TC
Location: 12171 - 12764 (+)
Gene ID: HRGMv2_3168_34_17
Type: TC
Location: 12825 - 13436 (+)
Type: TC
Location: 12825 - 13436 (+)
Gene ID: HRGMv2_3168_34_18
Type: CAZyme
Location: 13424 - 14560 (+)
Type: CAZyme
Location: 13424 - 14560 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Negativibacillus
Species
Negativibacillus sp905197685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3168_34_14 | vegetarian > vegan | 1.28986 | 0.01077 |