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Cluster: HRGMv2_3159_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3159_12 HRGMv2_3159_12_22 24392 26743 - GH36
TC HRGMv2_3159_12 HRGMv2_3159_12_23 27258 28889 + 2.A.35.2.1
pfam HRGMv2_3159_12 HRGMv2_3159_12_24 28971 29915 - Acetyltransf_1 | 2-thiour_desulf | FR47 | Acetyltransf_7 | Acetyltransf_10
STP HRGMv2_3159_12 HRGMv2_3159_12_25 29912 30391 - NUDIX
TC HRGMv2_3159_12 HRGMv2_3159_12_26 30398 31105 - 9.B.169.2.2
Gene ID: HRGMv2_3159_12_22
Type: CAZyme
Location: 24392 - 26743 (-)
Gene ID: HRGMv2_3159_12_23
Type: TC
Location: 27258 - 28889 (+)
Gene ID: HRGMv2_3159_12_24
Type: pfam
Location: 28971 - 29915 (-)
Gene ID: HRGMv2_3159_12_25
Type: STP
Location: 29912 - 30391 (-)
Gene ID: HRGMv2_3159_12_26
Type: TC
Location: 30398 - 31105 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3159_12_26 vegetarian > vegan 2.96564 0.00701

🧭 Explore Read Mapping of CGC

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