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Cluster: HRGMv2_3159_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3159_3 HRGMv2_3159_3_28 29104 30486 + 2.A.66.1.13
pfam HRGMv2_3159_3 HRGMv2_3159_3_29 30629 30955 - SCP2 | Alkyl_sulf_C
pfam HRGMv2_3159_3 HRGMv2_3159_3_30 31167 31838 - DUF624
TC HRGMv2_3159_3 HRGMv2_3159_3_31 32299 33579 + 3.A.1.1.44
TC HRGMv2_3159_3 HRGMv2_3159_3_32 33595 34494 + 3.A.1.1.11
TC HRGMv2_3159_3 HRGMv2_3159_3_33 34507 35346 + 3.A.1.1.34
CAZyme HRGMv2_3159_3 HRGMv2_3159_3_34 35521 37701 + GH36
TF HRGMv2_3159_3 HRGMv2_3159_3_35 37735 38592 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_3159_3 HRGMv2_3159_3_36 38824 40656 + GH13_4
Gene ID: HRGMv2_3159_3_28
Type: TC
Location: 29104 - 30486 (+)
Gene ID: HRGMv2_3159_3_29
Type: pfam
Location: 30629 - 30955 (-)
Gene ID: HRGMv2_3159_3_30
Type: pfam
Location: 31167 - 31838 (-)
Gene ID: HRGMv2_3159_3_31
Type: TC
Location: 32299 - 33579 (+)
Gene ID: HRGMv2_3159_3_32
Type: TC
Location: 33595 - 34494 (+)
Gene ID: HRGMv2_3159_3_33
Type: TC
Location: 34507 - 35346 (+)
Gene ID: HRGMv2_3159_3_34
Type: CAZyme
Location: 35521 - 37701 (+)
Gene ID: HRGMv2_3159_3_35
Type: TF
Location: 37735 - 38592 (-)
Gene ID: HRGMv2_3159_3_36
Type: CAZyme
Location: 38824 - 40656 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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