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Cluster: HRGMv2_3159_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3159_24 HRGMv2_3159_24_23 24057 25424 - 2.A.2.2.1
CAZyme HRGMv2_3159_24 HRGMv2_3159_24_24 25469 27073 - GH13_31
CAZyme HRGMv2_3159_24 HRGMv2_3159_24_25 27078 28370 - GH1
pfam HRGMv2_3159_24 HRGMv2_3159_24_26 28608 28964 - SpoVAC_SpoVAEB
TC HRGMv2_3159_24 HRGMv2_3159_24_27 28996 30021 - 9.A.11.1.1
pfam HRGMv2_3159_24 HRGMv2_3159_24_28 30203 30724 + Big_14
NULL(UNKNOWN) HRGMv2_3159_24 HRGMv2_3159_24_29 30846 31445 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3159_24 HRGMv2_3159_24_30 31447 32757 + 2.A.35.1.2
TC HRGMv2_3159_24 HRGMv2_3159_24_31 32821 33987 + 2.A.4.7.4
Gene ID: HRGMv2_3159_24_23
Type: TC
Location: 24057 - 25424 (-)
Gene ID: HRGMv2_3159_24_24
Type: CAZyme
Location: 25469 - 27073 (-)
Gene ID: HRGMv2_3159_24_25
Type: CAZyme
Location: 27078 - 28370 (-)
Gene ID: HRGMv2_3159_24_26
Type: pfam
Location: 28608 - 28964 (-)
Gene ID: HRGMv2_3159_24_27
Type: TC
Location: 28996 - 30021 (-)
Gene ID: HRGMv2_3159_24_28
Type: pfam
Location: 30203 - 30724 (+)
Gene ID: HRGMv2_3159_24_29
Type:
Location: 30846 - 31445 (+)
Gene ID: HRGMv2_3159_24_30
Type: TC
Location: 31447 - 32757 (+)
Gene ID: HRGMv2_3159_24_31
Type: TC
Location: 32821 - 33987 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3159_24_26 vegetarian > vegan 1.45346 0.00701
HRGMv2_3159_24_30 vegetarian > vegan 2.72322 0.00701

🧭 Explore Read Mapping of CGC

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