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Cluster: HRGMv2_3159_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3159_19 HRGMv2_3159_19_6 7252 8058 + CE4
pfam HRGMv2_3159_19 HRGMv2_3159_19_7 8260 9243 + 2-Hacid_dh | 2-Hacid_dh_C
TC HRGMv2_3159_19 HRGMv2_3159_19_8 9264 10244 + 9.B.126.2.7
TC HRGMv2_3159_19 HRGMv2_3159_19_9 10264 11625 + 2.A.38.1.1
TC HRGMv2_3159_19 HRGMv2_3159_19_10 11641 13089 + 2.A.38.1.1
peptidase HRGMv2_3159_19 HRGMv2_3159_19_11 13111 14346 + M29.UPW
STP HRGMv2_3159_19 HRGMv2_3159_19_12 14595 15776 + Aminotran_1_2
TC HRGMv2_3159_19 HRGMv2_3159_19_13 15835 17697 - 9.A.8.1.5
TC HRGMv2_3159_19 HRGMv2_3159_19_14 17822 18880 - 3.A.1.121.4
TC HRGMv2_3159_19 HRGMv2_3159_19_15 19052 19279 - 9.A.8.1.6
TC HRGMv2_3159_19 HRGMv2_3159_19_16 19450 21912 + 9.A.8.1.6
Gene ID: HRGMv2_3159_19_6
Type: CAZyme
Location: 7252 - 8058 (+)
Gene ID: HRGMv2_3159_19_7
Type: pfam
Location: 8260 - 9243 (+)
Gene ID: HRGMv2_3159_19_8
Type: TC
Location: 9264 - 10244 (+)
Gene ID: HRGMv2_3159_19_9
Type: TC
Location: 10264 - 11625 (+)
Gene ID: HRGMv2_3159_19_10
Type: TC
Location: 11641 - 13089 (+)
Gene ID: HRGMv2_3159_19_11
Type: peptidase
Location: 13111 - 14346 (+)
Gene ID: HRGMv2_3159_19_12
Type: STP
Location: 14595 - 15776 (+)
Gene ID: HRGMv2_3159_19_13
Type: TC
Location: 15835 - 17697 (-)
Gene ID: HRGMv2_3159_19_14
Type: TC
Location: 17822 - 18880 (-)
Gene ID: HRGMv2_3159_19_15
Type: TC
Location: 19052 - 19279 (-)
Gene ID: HRGMv2_3159_19_16
Type: TC
Location: 19450 - 21912 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3159_19_14 vegetarian > vegan 1.50655 0.00701

🧭 Explore Read Mapping of CGC

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