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Cluster: HRGMv2_3157_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3157_1 HRGMv2_3157_1_151 160784 162676 - GT35
TC HRGMv2_3157_1 HRGMv2_3157_1_152 163015 163929 - 2.A.21.9.2
TF HRGMv2_3157_1 HRGMv2_3157_1_153 163919 164581 - Trans_reg_C
pfam HRGMv2_3157_1 HRGMv2_3157_1_154 164687 167365 - FtsX | FtsX
TC HRGMv2_3157_1 HRGMv2_3157_1_155 167368 168042 - 3.A.1.125.3
NULL(UNKNOWN) HRGMv2_3157_1 HRGMv2_3157_1_156 168446 169759 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_3157_1 HRGMv2_3157_1_157 170131 171111 + HTH_AraC | HTH_AraC
TC HRGMv2_3157_1 HRGMv2_3157_1_158 171127 172890 + 8.A.59.2.1
STP HRGMv2_3157_1 HRGMv2_3157_1_159 172887 173846 + Peripla_BP_1
TF HRGMv2_3157_1 HRGMv2_3157_1_160 173831 175378 + HTH_AraC | HTH_AraC
TC HRGMv2_3157_1 HRGMv2_3157_1_161 175572 177224 + 2.A.21.3.21
Gene ID: HRGMv2_3157_1_151
Type: CAZyme
Location: 160784 - 162676 (-)
Gene ID: HRGMv2_3157_1_152
Type: TC
Location: 163015 - 163929 (-)
Gene ID: HRGMv2_3157_1_153
Type: TF
Location: 163919 - 164581 (-)
Gene ID: HRGMv2_3157_1_154
Type: pfam
Location: 164687 - 167365 (-)
Gene ID: HRGMv2_3157_1_155
Type: TC
Location: 167368 - 168042 (-)
Gene ID: HRGMv2_3157_1_156
Type:
Location: 168446 - 169759 (-)
Gene ID: HRGMv2_3157_1_157
Type: TF
Location: 170131 - 171111 (+)
Gene ID: HRGMv2_3157_1_158
Type: TC
Location: 171127 - 172890 (+)
Gene ID: HRGMv2_3157_1_159
Type: STP
Location: 172887 - 173846 (+)
Gene ID: HRGMv2_3157_1_160
Type: TF
Location: 173831 - 175378 (+)
Gene ID: HRGMv2_3157_1_161
Type: TC
Location: 175572 - 177224 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3157_1_161 vegan > omnivore 1.37960 0.02258

🧭 Explore Read Mapping of CGC

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