Cluster: HRGMv2_3143_CGC3
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3143
- CGC Family ID: CGCFAM_06204
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3143_21 | HRGMv2_3143_21_7 | 7451 | 8899 | + | GT5 |
| CAZyme | HRGMv2_3143_21 | HRGMv2_3143_21_8 | 8900 | 11311 | + | GT35 |
| TC | HRGMv2_3143_21 | HRGMv2_3143_21_9 | 11566 | 12726 | + | 3.A.18.1.1 |
| TC | HRGMv2_3143_21 | HRGMv2_3143_21_10 | 12755 | 14383 | + | 3.A.1.5.2 |
| pfam | HRGMv2_3143_21 | HRGMv2_3143_21_11 | 14443 | 15117 | - | Peptidase_M78 |
| NULL(UNKNOWN) | HRGMv2_3143_21 | HRGMv2_3143_21_12 | 15133 | 15567 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3143_21 | HRGMv2_3143_21_13 | 15886 | 16710 | + | 9.B.126.2.7 |
| TC | HRGMv2_3143_21 | HRGMv2_3143_21_14 | 16707 | 18068 | + | 2.A.38.1.1 |
Gene ID: HRGMv2_3143_21_7
Type: CAZyme
Location: 7451 - 8899 (+)
Type: CAZyme
Location: 7451 - 8899 (+)
Gene ID: HRGMv2_3143_21_8
Type: CAZyme
Location: 8900 - 11311 (+)
Type: CAZyme
Location: 8900 - 11311 (+)
Gene ID: HRGMv2_3143_21_9
Type: TC
Location: 11566 - 12726 (+)
Type: TC
Location: 11566 - 12726 (+)
Gene ID: HRGMv2_3143_21_10
Type: TC
Location: 12755 - 14383 (+)
Type: TC
Location: 12755 - 14383 (+)
Gene ID: HRGMv2_3143_21_11
Type: pfam
Location: 14443 - 15117 (-)
Type: pfam
Location: 14443 - 15117 (-)
Gene ID: HRGMv2_3143_21_12
Type:
Location: 15133 - 15567 (-)
Type:
Location: 15133 - 15567 (-)
Gene ID: HRGMv2_3143_21_13
Type: TC
Location: 15886 - 16710 (+)
Type: TC
Location: 15886 - 16710 (+)
Gene ID: HRGMv2_3143_21_14
Type: TC
Location: 16707 - 18068 (+)
Type: TC
Location: 16707 - 18068 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Vescimonas
Species
Vescimonas sp900550615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3143_21_12 | vegetarian > omnivore | 1.27092 | 0.01057 |
| HRGMv2_3143_21_13 | vegetarian > omnivore | 1.69157 | 0.01057 |
| HRGMv2_3143_21_13 | vegetarian > vegan | 1.31799 | 0.00290 |