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Cluster: HRGMv2_3143_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3143_3 HRGMv2_3143_3_4 2012 3334 - 2.A.35.1.3
TF HRGMv2_3143_3 HRGMv2_3143_3_5 3455 4381 + HTH_1
NULL(UNKNOWN) HRGMv2_3143_3 HRGMv2_3143_3_6 4457 5032 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3143_3 HRGMv2_3143_3_7 5220 6089 + 2.A.7.7.2
pfam HRGMv2_3143_3 HRGMv2_3143_3_8 6134 6553 - PCC
TC HRGMv2_3143_3 HRGMv2_3143_3_9 6575 9079 - 3.A.12.1.1
pfam HRGMv2_3143_3 HRGMv2_3143_3_10 9125 9961 - BacA
STP HRGMv2_3143_3 HRGMv2_3143_3_11 10241 11440 + Aminotran_1_2
TC HRGMv2_3143_3 HRGMv2_3143_3_12 11460 12116 + 9.B.18.1.2
CAZyme HRGMv2_3143_3 HRGMv2_3143_3_13 12125 13369 + GT4
Gene ID: HRGMv2_3143_3_4
Type: TC
Location: 2012 - 3334 (-)
Gene ID: HRGMv2_3143_3_5
Type: TF
Location: 3455 - 4381 (+)
Gene ID: HRGMv2_3143_3_6
Type:
Location: 4457 - 5032 (-)
Gene ID: HRGMv2_3143_3_7
Type: TC
Location: 5220 - 6089 (+)
Gene ID: HRGMv2_3143_3_8
Type: pfam
Location: 6134 - 6553 (-)
Gene ID: HRGMv2_3143_3_9
Type: TC
Location: 6575 - 9079 (-)
Gene ID: HRGMv2_3143_3_10
Type: pfam
Location: 9125 - 9961 (-)
Gene ID: HRGMv2_3143_3_11
Type: STP
Location: 10241 - 11440 (+)
Gene ID: HRGMv2_3143_3_12
Type: TC
Location: 11460 - 12116 (+)
Gene ID: HRGMv2_3143_3_13
Type: CAZyme
Location: 12125 - 13369 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3143_3_11 vegetarian > omnivore 3.54947 0.01057

🧭 Explore Read Mapping of CGC

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