Cluster: HRGMv2_3142_CGC28
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3142
- CGC Family ID: CGCFAM_02208
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3142_31 | HRGMv2_3142_31_14 | 11225 | 12676 | + | GH28 |
| TC | HRGMv2_3142_31 | HRGMv2_3142_31_15 | 12923 | 13603 | + | 3.A.1.3.12 |
| TC | HRGMv2_3142_31 | HRGMv2_3142_31_16 | 13593 | 14339 | + | 3.A.1.3.25 |
| pfam | HRGMv2_3142_31 | HRGMv2_3142_31_17 | 14369 | 15400 | + | OCD_Mu_crystall |
| TC | HRGMv2_3142_31 | HRGMv2_3142_31_18 | 15423 | 16232 | + | 3.A.1.3.27 |
Gene ID: HRGMv2_3142_31_14
Type: CAZyme
Location: 11225 - 12676 (+)
Type: CAZyme
Location: 11225 - 12676 (+)
Gene ID: HRGMv2_3142_31_15
Type: TC
Location: 12923 - 13603 (+)
Type: TC
Location: 12923 - 13603 (+)
Gene ID: HRGMv2_3142_31_16
Type: TC
Location: 13593 - 14339 (+)
Type: TC
Location: 13593 - 14339 (+)
Gene ID: HRGMv2_3142_31_17
Type: pfam
Location: 14369 - 15400 (+)
Type: pfam
Location: 14369 - 15400 (+)
Gene ID: HRGMv2_3142_31_18
Type: TC
Location: 15423 - 16232 (+)
Type: TC
Location: 15423 - 16232 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Faecousia
Species
Faecousia sp900762935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3142_31_15 | vegetarian > vegan | 1.04965 | 0.00012 |
| HRGMv2_3142_31_17 | vegetarian > vegan | 2.41479 | 0.00012 |