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Cluster: HRGMv2_3142_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3142_5 HRGMv2_3142_5_11 11403 12728 - GH10
TF HRGMv2_3142_5 HRGMv2_3142_5_12 12875 13627 + HTH_AraC | HTH_AraC
TF HRGMv2_3142_5 HRGMv2_3142_5_13 13624 14538 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_3142_5 HRGMv2_3142_5_14 14662 15759 + GH179
pfam HRGMv2_3142_5 HRGMv2_3142_5_15 15774 16745 + GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
TF HRGMv2_3142_5 HRGMv2_3142_5_16 16795 17790 - HTH_11
TC HRGMv2_3142_5 HRGMv2_3142_5_17 17930 18469 + 3.A.1.25.2
pfam HRGMv2_3142_5 HRGMv2_3142_5_18 18575 18967 + TnpV
TF HRGMv2_3142_5 HRGMv2_3142_5_19 19100 19492 + FUR
TC HRGMv2_3142_5 HRGMv2_3142_5_20 19931 21439 + 3.A.1.15.3
TC HRGMv2_3142_5 HRGMv2_3142_5_21 21452 22165 + 3.A.1.15.4
TC HRGMv2_3142_5 HRGMv2_3142_5_22 22162 23016 + 3.A.1.15.5
pfam HRGMv2_3142_5 HRGMv2_3142_5_23 24417 24668 + TnpW
pfam HRGMv2_3142_5 HRGMv2_3142_5_24 24763 26430 + Resolvase | Recombinase | Zn_ribbon_recom | DUF4368
CAZyme HRGMv2_3142_5 HRGMv2_3142_5_25 26780 28492 - GH2
TF HRGMv2_3142_5 HRGMv2_3142_5_26 28625 29413 + HTH_AraC
CAZyme HRGMv2_3142_5 HRGMv2_3142_5_27 29829 32825 - GH2
Gene ID: HRGMv2_3142_5_11
Type: CAZyme
Location: 11403 - 12728 (-)
Gene ID: HRGMv2_3142_5_12
Type: TF
Location: 12875 - 13627 (+)
Gene ID: HRGMv2_3142_5_13
Type: TF
Location: 13624 - 14538 (-)
Gene ID: HRGMv2_3142_5_14
Type: CAZyme
Location: 14662 - 15759 (+)
Gene ID: HRGMv2_3142_5_15
Type: pfam
Location: 15774 - 16745 (+)
Gene ID: HRGMv2_3142_5_16
Type: TF
Location: 16795 - 17790 (-)
Gene ID: HRGMv2_3142_5_17
Type: TC
Location: 17930 - 18469 (+)
Gene ID: HRGMv2_3142_5_18
Type: pfam
Location: 18575 - 18967 (+)
Gene ID: HRGMv2_3142_5_19
Type: TF
Location: 19100 - 19492 (+)
Gene ID: HRGMv2_3142_5_20
Type: TC
Location: 19931 - 21439 (+)
Gene ID: HRGMv2_3142_5_21
Type: TC
Location: 21452 - 22165 (+)
Gene ID: HRGMv2_3142_5_22
Type: TC
Location: 22162 - 23016 (+)
Gene ID: HRGMv2_3142_5_23
Type: pfam
Location: 24417 - 24668 (+)
Gene ID: HRGMv2_3142_5_24
Type: pfam
Location: 24763 - 26430 (+)
Gene ID: HRGMv2_3142_5_25
Type: CAZyme
Location: 26780 - 28492 (-)
Gene ID: HRGMv2_3142_5_26
Type: TF
Location: 28625 - 29413 (+)
Gene ID: HRGMv2_3142_5_27
Type: CAZyme
Location: 29829 - 32825 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3142_5_23 vegetarian > omnivore 2.23358 0.04233
HRGMv2_3142_5_23 vegetarian > vegan 1.76572 0.00012
HRGMv2_3142_5_24 vegetarian > omnivore 1.84039 0.04233
HRGMv2_3142_5_24 vegetarian > vegan 1.52153 0.00012

🧭 Explore Read Mapping of CGC

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