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Cluster: HRGMv2_3134_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3134_19 HRGMv2_3134_19_93 111565 111783 - 2.A.5.5.2
TC HRGMv2_3134_19 HRGMv2_3134_19_94 111747 112358 - 2.A.5.5.2
TC HRGMv2_3134_19 HRGMv2_3134_19_95 112477 114399 - 3.A.1.135.5
TC HRGMv2_3134_19 HRGMv2_3134_19_96 114396 116153 - 3.A.1.135.5
pfam HRGMv2_3134_19 HRGMv2_3134_19_97 116521 117351 - AP_endonuc_2
CAZyme HRGMv2_3134_19 HRGMv2_3134_19_98 117402 118607 - GH109
TF HRGMv2_3134_19 HRGMv2_3134_19_99 118762 119595 + HTH_AraC | HTH_AraC
pfam HRGMv2_3134_19 HRGMv2_3134_19_100 119781 120062 - ComFB
CAZyme HRGMv2_3134_19 HRGMv2_3134_19_101 120420 121298 + GH25
Gene ID: HRGMv2_3134_19_93
Type: TC
Location: 111565 - 111783 (-)
Gene ID: HRGMv2_3134_19_94
Type: TC
Location: 111747 - 112358 (-)
Gene ID: HRGMv2_3134_19_95
Type: TC
Location: 112477 - 114399 (-)
Gene ID: HRGMv2_3134_19_96
Type: TC
Location: 114396 - 116153 (-)
Gene ID: HRGMv2_3134_19_97
Type: pfam
Location: 116521 - 117351 (-)
Gene ID: HRGMv2_3134_19_98
Type: CAZyme
Location: 117402 - 118607 (-)
Gene ID: HRGMv2_3134_19_99
Type: TF
Location: 118762 - 119595 (+)
Gene ID: HRGMv2_3134_19_100
Type: pfam
Location: 119781 - 120062 (-)
Gene ID: HRGMv2_3134_19_101
Type: CAZyme
Location: 120420 - 121298 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3134_19_93 vegetarian > vegan 1.26541 0.01882

🧭 Explore Read Mapping of CGC

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