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Cluster: HRGMv2_3134_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3134_13 HRGMv2_3134_13_11 13143 14864 + 9.B.33.1.1
STP HRGMv2_3134_13 HRGMv2_3134_13_12 14851 15813 + Peripla_BP_1
pfam HRGMv2_3134_13 HRGMv2_3134_13_13 16004 17344 + Peripla_BP_4 | Peripla_BP_7
TC HRGMv2_3134_13 HRGMv2_3134_13_14 17539 19047 + 3.A.1.2.3
TC HRGMv2_3134_13 HRGMv2_3134_13_15 19062 20717 + 3.A.1.2.3
CAZyme HRGMv2_3134_13 HRGMv2_3134_13_16 20989 23538 + GH106
CAZyme HRGMv2_3134_13 HRGMv2_3134_13_17 23649 26363 - CBM67 | GH78
CAZyme HRGMv2_3134_13 HRGMv2_3134_13_18 26394 28157 - GH2
TF HRGMv2_3134_13 HRGMv2_3134_13_19 28328 29092 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_3134_13 HRGMv2_3134_13_20 29213 31054 + GH146
TF HRGMv2_3134_13 HRGMv2_3134_13_21 31081 31938 - HTH_1
TC HRGMv2_3134_13 HRGMv2_3134_13_22 32046 32609 + 2.A.51.1.6
TC HRGMv2_3134_13 HRGMv2_3134_13_23 32606 33163 + 2.A.51.1.6
Gene ID: HRGMv2_3134_13_11
Type: TC
Location: 13143 - 14864 (+)
Gene ID: HRGMv2_3134_13_12
Type: STP
Location: 14851 - 15813 (+)
Gene ID: HRGMv2_3134_13_13
Type: pfam
Location: 16004 - 17344 (+)
Gene ID: HRGMv2_3134_13_14
Type: TC
Location: 17539 - 19047 (+)
Gene ID: HRGMv2_3134_13_15
Type: TC
Location: 19062 - 20717 (+)
Gene ID: HRGMv2_3134_13_16
Type: CAZyme
Location: 20989 - 23538 (+)
Gene ID: HRGMv2_3134_13_17
Type: CAZyme
Location: 23649 - 26363 (-)
Gene ID: HRGMv2_3134_13_18
Type: CAZyme
Location: 26394 - 28157 (-)
Gene ID: HRGMv2_3134_13_19
Type: TF
Location: 28328 - 29092 (-)
Gene ID: HRGMv2_3134_13_20
Type: CAZyme
Location: 29213 - 31054 (+)
Gene ID: HRGMv2_3134_13_21
Type: TF
Location: 31081 - 31938 (-)
Gene ID: HRGMv2_3134_13_22
Type: TC
Location: 32046 - 32609 (+)
Gene ID: HRGMv2_3134_13_23
Type: TC
Location: 32606 - 33163 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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