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Cluster: HRGMv2_3127_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3127_6 HRGMv2_3127_6_226 222342 223316 + 3.A.1.1.10
TC HRGMv2_3127_6 HRGMv2_3127_6_227 223334 224299 + 3.A.1.1.29
pfam HRGMv2_3127_6 HRGMv2_3127_6_228 224365 225939 + DUF3502
pfam HRGMv2_3127_6 HRGMv2_3127_6_229 226153 228549 + Glyco_hydro_38N
CAZyme HRGMv2_3127_6 HRGMv2_3127_6_230 228581 229597 + GH130_2
sulfatase HRGMv2_3127_6 HRGMv2_3127_6_231 229775 231022 + S1_46
CAZyme HRGMv2_3127_6 HRGMv2_3127_6_232 231068 234169 + GH38
CAZyme HRGMv2_3127_6 HRGMv2_3127_6_233 234224 236050 + GH20
pfam HRGMv2_3127_6 HRGMv2_3127_6_234 236069 237349 + MFS_1
CAZyme HRGMv2_3127_6 HRGMv2_3127_6_235 237373 239976 + GH3
Gene ID: HRGMv2_3127_6_226
Type: TC
Location: 222342 - 223316 (+)
Gene ID: HRGMv2_3127_6_227
Type: TC
Location: 223334 - 224299 (+)
Gene ID: HRGMv2_3127_6_228
Type: pfam
Location: 224365 - 225939 (+)
Gene ID: HRGMv2_3127_6_229
Type: pfam
Location: 226153 - 228549 (+)
Gene ID: HRGMv2_3127_6_230
Type: CAZyme
Location: 228581 - 229597 (+)
Gene ID: HRGMv2_3127_6_231
Type: sulfatase
Location: 229775 - 231022 (+)
Gene ID: HRGMv2_3127_6_232
Type: CAZyme
Location: 231068 - 234169 (+)
Gene ID: HRGMv2_3127_6_233
Type: CAZyme
Location: 234224 - 236050 (+)
Gene ID: HRGMv2_3127_6_234
Type: pfam
Location: 236069 - 237349 (+)
Gene ID: HRGMv2_3127_6_235
Type: CAZyme
Location: 237373 - 239976 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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