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Cluster: HRGMv2_3127_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3127_34 HRGMv2_3127_34_28 39186 40136 - 9.B.211.1.2
pfam HRGMv2_3127_34 HRGMv2_3127_34_29 40155 40850 - DUF969
TC HRGMv2_3127_34 HRGMv2_3127_34_30 41212 42873 - 2.A.53.3.9
NULL(UNKNOWN) HRGMv2_3127_34 HRGMv2_3127_34_31 43028 43294 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_3127_34 HRGMv2_3127_34_32 43415 44635 - M20.UPB
TC HRGMv2_3127_34 HRGMv2_3127_34_33 44871 45917 + 9.B.18.2.1
pfam HRGMv2_3127_34 HRGMv2_3127_34_34 45939 47063 + Epimerase | NAD_binding_4 | Polysacc_synt_C
pfam HRGMv2_3127_34 HRGMv2_3127_34_35 47089 48228 + Epimerase_2
CAZyme HRGMv2_3127_34 HRGMv2_3127_34_36 48259 49491 + GT4
CAZyme HRGMv2_3127_34 HRGMv2_3127_34_37 49502 50212 + GT2
pfam HRGMv2_3127_34 HRGMv2_3127_34_38 50209 50577 + DUF2304
TC HRGMv2_3127_34 HRGMv2_3127_34_39 50700 52175 + 2.A.50.2.1
NULL(UNKNOWN) HRGMv2_3127_34 HRGMv2_3127_34_40 52191 53513 + NULL(UNKNOWN)
[View Structural Homologs]
STP HRGMv2_3127_34 HRGMv2_3127_34_41 53590 54615 - Peripla_BP_2
TC HRGMv2_3127_34 HRGMv2_3127_34_42 54660 55412 - 3.A.1.14.7
pfam HRGMv2_3127_34 HRGMv2_3127_34_43 55415 56392 - FecCD
TC HRGMv2_3127_34 HRGMv2_3127_34_44 56389 57426 - 3.A.1.14.4
Gene ID: HRGMv2_3127_34_28
Type: TC
Location: 39186 - 40136 (-)
Gene ID: HRGMv2_3127_34_29
Type: pfam
Location: 40155 - 40850 (-)
Gene ID: HRGMv2_3127_34_30
Type: TC
Location: 41212 - 42873 (-)
Gene ID: HRGMv2_3127_34_31
Type:
Location: 43028 - 43294 (-)
Gene ID: HRGMv2_3127_34_32
Type: peptidase
Location: 43415 - 44635 (-)
Gene ID: HRGMv2_3127_34_33
Type: TC
Location: 44871 - 45917 (+)
Gene ID: HRGMv2_3127_34_34
Type: pfam
Location: 45939 - 47063 (+)
Gene ID: HRGMv2_3127_34_35
Type: pfam
Location: 47089 - 48228 (+)
Gene ID: HRGMv2_3127_34_36
Type: CAZyme
Location: 48259 - 49491 (+)
Gene ID: HRGMv2_3127_34_37
Type: CAZyme
Location: 49502 - 50212 (+)
Gene ID: HRGMv2_3127_34_38
Type: pfam
Location: 50209 - 50577 (+)
Gene ID: HRGMv2_3127_34_39
Type: TC
Location: 50700 - 52175 (+)
Gene ID: HRGMv2_3127_34_40
Type:
Location: 52191 - 53513 (+)
Gene ID: HRGMv2_3127_34_41
Type: STP
Location: 53590 - 54615 (-)
Gene ID: HRGMv2_3127_34_42
Type: TC
Location: 54660 - 55412 (-)
Gene ID: HRGMv2_3127_34_43
Type: pfam
Location: 55415 - 56392 (-)
Gene ID: HRGMv2_3127_34_44
Type: TC
Location: 56389 - 57426 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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