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Cluster: HRGMv2_3127_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3127_24 HRGMv2_3127_24_22 26867 27595 + GH25
TC HRGMv2_3127_24 HRGMv2_3127_24_23 27704 28903 + 2.A.86.1.8
pfam HRGMv2_3127_24 HRGMv2_3127_24_24 29015 29326 - Thioredoxin | Thioredoxin_2 | Thioredoxin_3 | TraF | Thioredoxin_9
TF HRGMv2_3127_24 HRGMv2_3127_24_25 29469 30137 - Crp
TC HRGMv2_3127_24 HRGMv2_3127_24_26 30234 30797 - 2.A.107.1.2
CAZyme HRGMv2_3127_24 HRGMv2_3127_24_27 31863 38696 + GH33 | GH33
pfam HRGMv2_3127_24 HRGMv2_3127_24_28 38911 39570 + Pentapeptide | Pentapeptide | Pentapeptide | Pentapeptide | Pentapeptide_4 | Pentapeptide_4 | Pentapeptide_4
TC HRGMv2_3127_24 HRGMv2_3127_24_29 39596 40966 + 2.A.66.1.13
TF HRGMv2_3127_24 HRGMv2_3127_24_30 41031 41837 - 0040266
TC HRGMv2_3127_24 HRGMv2_3127_24_31 42135 43109 + 2.A.10.1.1
Gene ID: HRGMv2_3127_24_22
Type: CAZyme
Location: 26867 - 27595 (+)
Gene ID: HRGMv2_3127_24_23
Type: TC
Location: 27704 - 28903 (+)
Gene ID: HRGMv2_3127_24_24
Type: pfam
Location: 29015 - 29326 (-)
Gene ID: HRGMv2_3127_24_25
Type: TF
Location: 29469 - 30137 (-)
Gene ID: HRGMv2_3127_24_26
Type: TC
Location: 30234 - 30797 (-)
Gene ID: HRGMv2_3127_24_27
Type: CAZyme
Location: 31863 - 38696 (+)
Gene ID: HRGMv2_3127_24_28
Type: pfam
Location: 38911 - 39570 (+)
Gene ID: HRGMv2_3127_24_29
Type: TC
Location: 39596 - 40966 (+)
Gene ID: HRGMv2_3127_24_30
Type: TF
Location: 41031 - 41837 (-)
Gene ID: HRGMv2_3127_24_31
Type: TC
Location: 42135 - 43109 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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