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Cluster: HRGMv2_3117_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3117_32 HRGMv2_3117_32_12 10769 11980 - 3.B.1.1.2
TC HRGMv2_3117_32 HRGMv2_3117_32_13 11993 12382 - 3.B.1.1.2
pfam HRGMv2_3117_32 HRGMv2_3117_32_14 12379 12717 - OAD_gamma
TC HRGMv2_3117_32 HRGMv2_3117_32_15 12732 14135 - 3.B.1.1.6
pfam HRGMv2_3117_32 HRGMv2_3117_32_16 14287 15900 - PEPCK_ATP
CAZyme HRGMv2_3117_32 HRGMv2_3117_32_17 16196 16912 - CE4
pfam HRGMv2_3117_32 HRGMv2_3117_32_18 17005 17814 + Methyltransf_11 | Methyltransf_12 | Methyltransf_25 | Methyltransf_31 | Zn_ribbon_RlmA
pfam HRGMv2_3117_32 HRGMv2_3117_32_19 17965 20703 - SLH | SLH | SLH | Cadherin-like
TC HRGMv2_3117_32 HRGMv2_3117_32_20 20948 22225 + 2.A.37.3.3
Gene ID: HRGMv2_3117_32_12
Type: TC
Location: 10769 - 11980 (-)
Gene ID: HRGMv2_3117_32_13
Type: TC
Location: 11993 - 12382 (-)
Gene ID: HRGMv2_3117_32_14
Type: pfam
Location: 12379 - 12717 (-)
Gene ID: HRGMv2_3117_32_15
Type: TC
Location: 12732 - 14135 (-)
Gene ID: HRGMv2_3117_32_16
Type: pfam
Location: 14287 - 15900 (-)
Gene ID: HRGMv2_3117_32_17
Type: CAZyme
Location: 16196 - 16912 (-)
Gene ID: HRGMv2_3117_32_18
Type: pfam
Location: 17005 - 17814 (+)
Gene ID: HRGMv2_3117_32_19
Type: pfam
Location: 17965 - 20703 (-)
Gene ID: HRGMv2_3117_32_20
Type: TC
Location: 20948 - 22225 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Oscillospiraceae
→
Genus
Faecousia
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3117_32_14 vegetarian > omnivore 1.32290 0.02695

🧭 Explore Read Mapping of CGC

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