Cluster: HRGMv2_3117_CGC13
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: HRGMv2_3117
- CGC Family ID: CGCFAM_00010
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3117_68 | HRGMv2_3117_68_3 | 1348 | 2691 | + | 3.A.1.1.45 |
| TC | HRGMv2_3117_68 | HRGMv2_3117_68_4 | 2797 | 3639 | + | 3.A.1.1.45 |
| TC | HRGMv2_3117_68 | HRGMv2_3117_68_5 | 3636 | 4475 | + | 3.A.1.1.45 |
| TF | HRGMv2_3117_68 | HRGMv2_3117_68_6 | 4512 | 5525 | + | LacI |
| CAZyme | HRGMv2_3117_68 | HRGMv2_3117_68_7 | 5553 | 7061 | + | GH77 |
| pfam | HRGMv2_3117_68 | HRGMv2_3117_68_8 | 7058 | 7717 | + | Phosphorylase |
| CAZyme | HRGMv2_3117_68 | HRGMv2_3117_68_9 | 7786 | 9315 | + | GT35 |
| TC | HRGMv2_3117_68 | HRGMv2_3117_68_10 | 9343 | 10503 | + | 3.A.1.1.22 |
Gene ID: HRGMv2_3117_68_3
Type: TC
Location: 1348 - 2691 (+)
Type: TC
Location: 1348 - 2691 (+)
Gene ID: HRGMv2_3117_68_4
Type: TC
Location: 2797 - 3639 (+)
Type: TC
Location: 2797 - 3639 (+)
Gene ID: HRGMv2_3117_68_5
Type: TC
Location: 3636 - 4475 (+)
Type: TC
Location: 3636 - 4475 (+)
Gene ID: HRGMv2_3117_68_6
Type: TF
Location: 4512 - 5525 (+)
Type: TF
Location: 4512 - 5525 (+)
Gene ID: HRGMv2_3117_68_7
Type: CAZyme
Location: 5553 - 7061 (+)
Type: CAZyme
Location: 5553 - 7061 (+)
Gene ID: HRGMv2_3117_68_8
Type: pfam
Location: 7058 - 7717 (+)
Type: pfam
Location: 7058 - 7717 (+)
Gene ID: HRGMv2_3117_68_9
Type: CAZyme
Location: 7786 - 9315 (+)
Type: CAZyme
Location: 7786 - 9315 (+)
Gene ID: HRGMv2_3117_68_10
Type: TC
Location: 9343 - 10503 (+)
Type: TC
Location: 9343 - 10503 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Faecousia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.