Cluster: HRGMv2_3099_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3099
- CGC Family ID: CGCFAM_10038
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3099_16 | HRGMv2_3099_16_22 | 18383 | 19195 | + | GT8 |
| TF | HRGMv2_3099_16 | HRGMv2_3099_16_23 | 19364 | 19834 | + | MarR |
| TC | HRGMv2_3099_16 | HRGMv2_3099_16_24 | 19839 | 21653 | + | 3.A.16.1.2 |
| NULL(UNKNOWN) | HRGMv2_3099_16 | HRGMv2_3099_16_25 | 21676 | 22080 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_3099_16 | HRGMv2_3099_16_26 | 22238 | 23020 | + | Fer4 | Fer4 |
| TC | HRGMv2_3099_16 | HRGMv2_3099_16_27 | 23107 | 23763 | - | 3.A.3.1.8 |
Gene ID: HRGMv2_3099_16_22
Type: CAZyme
Location: 18383 - 19195 (+)
Type: CAZyme
Location: 18383 - 19195 (+)
Gene ID: HRGMv2_3099_16_23
Type: TF
Location: 19364 - 19834 (+)
Type: TF
Location: 19364 - 19834 (+)
Gene ID: HRGMv2_3099_16_24
Type: TC
Location: 19839 - 21653 (+)
Type: TC
Location: 19839 - 21653 (+)
Gene ID: HRGMv2_3099_16_25
Type:
Location: 21676 - 22080 (+)
Type:
Location: 21676 - 22080 (+)
Gene ID: HRGMv2_3099_16_26
Type: STP
Location: 22238 - 23020 (+)
Type: STP
Location: 22238 - 23020 (+)
Gene ID: HRGMv2_3099_16_27
Type: TC
Location: 23107 - 23763 (-)
Type: TC
Location: 23107 - 23763 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Merdimmobilis
Species
Merdimmobilis hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3099_16_26 | omnivore > vegan | 17.14228 | 0.04853 |
| HRGMv2_3099_16_26 | vegetarian > vegan | 12.93345 | 0.04449 |