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Cluster: HRGMv2_3092_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3092_18 HRGMv2_3092_18_17 17855 18604 - 3.A.1.3.25
TC HRGMv2_3092_18 HRGMv2_3092_18_18 18588 19331 - 3.A.1.3.15
TC HRGMv2_3092_18 HRGMv2_3092_18_19 19466 20302 - 3.A.1.3.15
NULL(UNKNOWN) HRGMv2_3092_18 HRGMv2_3092_18_20 20599 21294 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3092_18 HRGMv2_3092_18_21 21296 22411 - GT28
pfam HRGMv2_3092_18 HRGMv2_3092_18_22 22425 22892 - CrtO
TC HRGMv2_3092_18 HRGMv2_3092_18_23 23094 23804 - 3.A.1.4.10
TC HRGMv2_3092_18 HRGMv2_3092_18_24 23807 24649 - 3.A.1.4.10
TC HRGMv2_3092_18 HRGMv2_3092_18_25 24652 25743 - 3.A.1.4.8
TC HRGMv2_3092_18 HRGMv2_3092_18_26 25754 26632 - 3.A.1.4.10
Gene ID: HRGMv2_3092_18_17
Type: TC
Location: 17855 - 18604 (-)
Gene ID: HRGMv2_3092_18_18
Type: TC
Location: 18588 - 19331 (-)
Gene ID: HRGMv2_3092_18_19
Type: TC
Location: 19466 - 20302 (-)
Gene ID: HRGMv2_3092_18_20
Type:
Location: 20599 - 21294 (-)
Gene ID: HRGMv2_3092_18_21
Type: CAZyme
Location: 21296 - 22411 (-)
Gene ID: HRGMv2_3092_18_22
Type: pfam
Location: 22425 - 22892 (-)
Gene ID: HRGMv2_3092_18_23
Type: TC
Location: 23094 - 23804 (-)
Gene ID: HRGMv2_3092_18_24
Type: TC
Location: 23807 - 24649 (-)
Gene ID: HRGMv2_3092_18_25
Type: TC
Location: 24652 - 25743 (-)
Gene ID: HRGMv2_3092_18_26
Type: TC
Location: 25754 - 26632 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3092_18_19 vegetarian > vegan 1.07214 0.00012
HRGMv2_3092_18_20 vegetarian > vegan 1.05368 0.00012
HRGMv2_3092_18_21 vegetarian > vegan 1.39792 0.00012

🧭 Explore Read Mapping of CGC

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